Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01016 ATGAATTGTTTTCCGTGTTTTTCAAAGACTAAGAAATGCAATAGCAGGAGGGAGCAGCAAGGGCCTACACAACACCAAGAAAACTTTATAGCAACAAAACCTCCGGACGTGAAAAAACCAAAGGCAGATGATCCAAACAATGTTGACACTTCAAATATTCAAGCGCAAAATTTCACGTTCCGTGAACTGGCAATTGCAACGAAGAATTTCCGACAAGAATGTTTGATGGGTGAAGGTTGCTTTGGCAGAGTTTACAAGGGAACAATTCCTGCAACCGGGCAGGTGGTAGCAGTGAAGCAACTTGACCGAAATGGGGCGCAAGGATGTAAGGATTTTCTGGTTGAGGTTTTGATGTTAAGCCTCTTGAACCATGACAACCTCGTCAAACTCACCGGTTATTGCGCTGATGGAGATCAACGTCTTTTGGTGTATGAGTTCATGCCAGGTGGCTCGTTAGAAGCCCGTCTTCTTGAGAGGAGACCAGATGAACCTCCATTAGATTGGTACAGCAGAATGAAAATAGCATCACATGCTGCGAAAGGATTGTGGTACTTGCACGACAAGGCCAACCCTTCAATCATATATCGAGACTTGAAATCTGCAAACATCTTGCTAGATGATGATTTCAATGCAAAACTATCAGATTATGGATTGGCCAAACTTGCTGGCAACGATAAGGCGAACATTGTACCCACAAGAGTTATGGGCACTTATGGTTACAGTGCTCCTGAGTACGTAAGAACAGGTAACCTCACCTTGAAATCAGATGTCTACAGTTTTGGAGTTGTCTTGCTAGAGCTCATTACTGGACGGCGTGCGGTTGACACCACAAGATCACACGATGAGCAGAATCTAGTTTCATGGGCACAACCCATATTTAGGGATCCAAAGAGGTATCCAGATATGGCAGATCCAAATTTGAAAAATGATTTCCCAGAAAAGGATTTGAACCAAGTTGTTGCAATAGCAGCCATGTGCTTGCAGGAGGAAGCAGCAGCCCGTCCTTTGATGAGTGATGTTGTAACTGCTCTGAGTTTTCTTTCGACTGCTTGTCCAGAGGGTGGTGGTGGCAACAACAATAGCTCCTCCGGTGAATACTCTTCTTCTAGCGATGACAGTGGATCTTCTAAAAACCAGGTTAGTGAAAAATAA 1152 0.4401 MNCFPCFSKTKKCNSRREQQGPTQHQENFIATKPPDVKKPKADDPNNVDTSNIQAQNFTFRELAIATKNFRQECLMGEGCFGRVYKGTIPATGQVVAVKQLDRNGAQGCKDFLVEVLMLSLLNHDNLVKLTGYCADGDQRLLVYEFMPGGSLEARLLERRPDEPPLDWYSRMKIASHAAKGLWYLHDKANPSIIYRDLKSANILLDDDFNAKLSDYGLAKLAGNDKANIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRSHDEQNLVSWAQPIFRDPKRYPDMADPNLKNDFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTACPEGGGGNNNSSSGEYSSSSDDSGSSKNQVSEK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01016 383 CDD STKc_IRAK 76 344 - -
Vian6g01016 383 Gene3D Phosphorylase Kinase; domain 1 40 146 - -
Vian6g01016 383 MobiDBLite consensus disorder prediction 15 51 - -
Vian6g01016 383 FunFam probable serine/threonine-protein kinase RLCKVII 42 146 - -
Vian6g01016 383 FunFam Serine/threonine-protein kinase PBS1 147 361 - -
Vian6g01016 383 ProSiteProfiles Protein kinase domain profile. 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01016 383 MobiDBLite consensus disorder prediction 352 383 - -
Vian6g01016 383 Gene3D Transferase(Phosphotransferase) domain 1 147 353 - -
Vian6g01016 383 PANTHER OS07G0668900 PROTEIN 3 350 - -
Vian6g01016 383 SMART serkin_6 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01016 383 Pfam Protein kinase domain 72 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01016 383 SUPERFAMILY Protein kinase-like (PK-like) 47 347 IPR011009 -
Vian6g01016 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01016 Vian-Chr6 27468267 27470190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01016 1 354 Glycoside Hydrolase AT3G07070 65.205 8.92e-164 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vian6g01016 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01016 - - vra:106754031 712.605