Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01015 ATGCCTTGCGGTGTGTATGAGGCGAAGTGCAGGTACAGTGAAAGAAATAATAGAATAAGAGGATTTAGAAGAGAAAAATGGCGGCGTAGCATAAGAGTTCCGGGGATGAATGGGATGAGAAGGGATGAGATAGATAAGAAGACGATGGTGTTCGTGTGGACTGCAAACATACCCGTCACTGCACTCTGCAACCACAGCGCACCCGTCCACGCTTCAATTTTGCTTCCAATTTTCTCGCAAATGGACTCAATGTTCCAATCGGCTAAGGGTTCATGTGTGCTGAAGTTCAACACAAGCCAGTATGTGGCAATGGATGAGTGCGTCGAAGTGAAAGAGTATATTTACACGTGGGGTGAGGACGGGTTCCCGACCTCATTGTGCTGTCGAAATGCTCTCACGGTTGTGTCCAATGCGTTGGCCACACACGCACTGAGCTCGGGAGGACAAGTGTTCCTTTCCCAAGATCAATGGCAGCGTTGTTTGCAGTCATTTCACCCGCAACCAGGGATGTCACTTGATTCATGTGGCTTTGACAACTTTTACCGAGGAAGTTCCATATGCTCTAACTTCATTTTGCAGGATGTTAGGACCCTGCAACCGTACCAAGACGCATTGAGCCAGTGCTCCCACTTCGACCAACCTTTTGGTCAATCTTGTGCAGATTGTACCAGTGGAATATCGAACGTGAGAGATACTTTGTATTCTCAAGTTGAAAAACACAACAACGACATTGACAGAGCCATATGTGGGGTAGCAGCTATTGTTGGTCTTGCAGCTGGCAGACCAAATGATCCTCTCAAGAAGGGTCGTAAACCGGTTGACTTGCAAGACATCACTGCATGGTCTGGATTGTACTGGTTCTGCAAAACGGAAATTGAGAATGCCATGAATTATGGTGGTCGAAAGATAAGCCTTGGACGTGGAAGTGCAGGGCATGTATATAGAGGCGTTCTACCCAGTGGTCAAATAGTGGCCATCAAGCATTTAACAAAGAGTAATACCTCTGAGTCTTTCACTCGAGAAATTGAAGGCCTTTCAAGGCTTCGTCATCCAAACTTGGTTTGCCTCTTTGGCTGCTGCATTGAAGGGGATGAGAGATATTTAGTCTATGAATTTTGTGCAAACGGGAATCTTGCTCAACATCTCTTACGTAATCTAACGTGTGCCAGTGATGTATATAGTTTTGGTATTGTTGCTTTGCAAATATTGTCTGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGACCAGCTCACAAGGAAGGCAAGAGATGTGAGTATGGGAAAGCGCCCATTGTCTGATTTTGAAGACCCACGACTAAAAGGAAAGGTTGATAAGGCAGACTTCGAAGCCATCCTACAAATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGACCAACCATTGAGGTAGTTTTTGATGAATTGGACAAGGTCTGCATGGACACAGAAACCAAGATGAAGGTAAAGAAGGATGAGAGTTCATCATCAAACTCCACCCCCAGCTCCAAATCCTCCAAATCAGCTCCTCTTTGA 1542 0.4559 MPCGVYEAKCRYSERNNRIRGFRREKWRRSIRVPGMNGMRRDEIDKKTMVFVWTANIPVTALCNHSAPVHASILLPIFSQMDSMFQSAKGSCVLKFNTSQYVAMDECVEVKEYIYTWGEDGFPTSLCCRNALTVVSNALATHALSSGGQVFLSQDQWQRCLQSFHPQPGMSLDSCGFDNFYRGSSICSNFILQDVRTLQPYQDALSQCSHFDQPFGQSCADCTSGISNVRDTLYSQVEKHNNDIDRAICGVAAIVGLAAGRPNDPLKKGRKPVDLQDITAWSGLYWFCKTEIENAMNYGGRKISLGRGSAGHVYRGVLPSGQIVAIKHLTKSNTSESFTREIEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRNLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLKGKVDKADFEAILQIAVLCVAKSSKGRPTIEVVFDELDKVCMDTETKMKVKKDESSSSNSTPSSKSSKSAPL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01015 513 Gene3D Phosphorylase Kinase; domain 1 276 372 - -
Vian6g01015 513 MobiDBLite consensus disorder prediction 489 513 - -
Vian6g01015 513 Pfam Protein kinase domain 304 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01015 513 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 385 499 - -
Vian6g01015 513 MobiDBLite consensus disorder prediction 496 513 - -
Vian6g01015 513 Pfam SPARK 87 239 IPR043891 -
Vian6g01015 513 SUPERFAMILY Protein kinase-like (PK-like) 305 480 IPR011009 -
Vian6g01015 513 Gene3D Transferase(Phosphotransferase) domain 1 382 511 - -
Vian6g01015 513 ProSiteProfiles Protein kinase domain profile. 299 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01015 Vian-Chr6 27461076 27465805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01015 282 383 Receptor kinase-like Gene Family AT1G11050 42.593 1.85e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vian6g01015 SPARK 4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01015 - - vum:124837890 562.762