Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01012 ATGTCTGAAGTGAATGCTACCCCTGAAGTTACTCAAAACAACACCATCTACATCAATAACCTTAACGAGAAGATCAAGATTGATGAGTTGAAGAAGTCTCTGAACGCTGTTTTCACTCAGTTCGGGAAGATACTTGAGGTGTTAGCTTTTAAAACCCTAAAACACAAAGGTCAAGCTTGGGTGGTCTTTGAGGAGGTCTCTTCTGCTTCCAATGCTCTGCGGCAAATGCAAGGATTTCCTTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACCAAATCTGATGTAATAGCAAAAGCGGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGCATGATGACAAAGGCAAAAAGCGGAAGGACCAACATGATGCTAATTTAGCTGGAATGGGACTAAACCCAGCCTATTCTGGTGCTTATGGTGCAACACCTACGATACCTTATCCAGGTGGTGCAAAATCCATGGTACCTGAGGCTCCTGCACCACCAAATAATATTCTCTTTATTCAGAATCTTCCCAATGAGTCAACTCCCATGATGCTGCAAATGCTCTTTCTCCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAGCAAAGCCAGGAATTGCCTTTGTGGAATATGGTGATGAGATGCAATCTACAGTGGCTATGCAGTCGCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTACGCCAAAAAATAG 726 0.4215 MSEVNATPEVTQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNPAYSGAYGATPTIPYPGGAKSMVPEAPAPPNNILFIQNLPNESTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQSLQGFKITPQNPMLITYAKK 241
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01012 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 241 IPR000504 GO:0003723
Vian6g01012 241 FunFam U2 small nuclear ribonucleoprotein B'' 158 241 - -
Vian6g01012 241 CDD RRM1_U1A_like 15 92 - -
Vian6g01012 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Vian6g01012 241 FunFam U1 small nuclear ribonucleoprotein A 8 113 - -
Vian6g01012 241 SUPERFAMILY RNA-binding domain, RBD 13 230 IPR035979 GO:0003676
Vian6g01012 241 CDD RRM2_U1A_like 165 237 - -
Vian6g01012 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Vian6g01012 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 228 IPR000504 GO:0003723
Vian6g01012 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 81 241 - -
Vian6g01012 241 SMART rrm1_1 15 89 IPR000504 GO:0003723
Vian6g01012 241 SMART rrm1_1 168 237 IPR000504 GO:0003723
Vian6g01012 241 MobiDBLite consensus disorder prediction 105 130 - -
Vian6g01012 241 Gene3D - 155 241 IPR012677 -
Vian6g01012 241 Gene3D - 7 113 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian6g01012 Vian-Chr6 27441029 27444252 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01012 3 139 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 7.32e-07 47.8