Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01010 ATGGCGAAGAGGGAGCGAGTGAGAGGAGTGTCGGCGTCGGAATTGAAGGAGAGGTTGAGGGAATTGGTGAAGGCTATAGTTGACTCCGACGACTACGTGGTGGCAGCCGCCGACGAAGCCATCGTCACCCTTTCGGCTCTCAAACATTTAAAGTCTCCAGACTCTTTGGATGACTTTCCCCTCCCTCCCGAATTTCGATGCCCCATTTCAACCCAATTGATGACGGATCCCGTTATCTTATCCACCGGCCAGACTTATGATAGGCCATTCATTCAAAGGTGGTTGGATGAGGGTCACAGAACGTGTCCGCAGACCCAGCAGGTCCTGTCTCACTCCATTTTAACACCTAATTACTTGGTCCGGGACATGATTGTGCAGTGGTGTAGGGAGCGTGGAATTGAGCTTCCCGAGCCTGTTAAGGACATTGATGGCGTGGTCACTAAGGCGGATAGGAACCACTTGAATTCGTTGCTTCGGAAGTTGTCATTGTCTGTTTCTGATCAGAAACAAGCTGCCAAGGAGCTTCGCCTTTTGACAAAGCGAATGCCTTCTATTCGAATCCTTGTTGGGGAGTCCAGTGATGTGATTCCCCAATTGCTGAGTCCATTATCATCGCCTGGCACGGCTTCTACTGACCCTGATCTCCACGAGGATTTGATCACCACGGTTCTCAATCTCTCTATCCATGATGATAACAAAAAGGCCTTTGCAGAGGATCCTGCGGTGATTTCTCTGCTTATTGATGCCTTGAAACGTGGAACAATTCAAACGAGGAGCAATGCTGCTGCTGCTATTTTCACATTGTCCGCGCTTGATTCCAACAAATACATCATTGGAAAATCCGGGGCTATCAAGCATTTGCTTGCGCTTTTGGATGAGGGACAGCCATTGGCCATGAAAGATGCTGCTTCGGCAATATTTAACCTTTGTCTTGTACACGAGAATAAAGGAAGGACAGTGCGAGATGGGGCAGTTCGGGTTATTCTGAACAAGATGATGGACCACATTCTAGTTGATGAGTTGTTGGCCATACTGGCACTCCTATCCAGTCATCCCAGGGCTGTTGAAGAAATGGGTGATCTAGGTGCTGTTCCTTTGTTATTGGGGATTATTAGGGAGAGTGCATCAGAGAGGAGCAAGGAAAATTGTGTTGCAATTCTGTATACAATCTGTTTTAGTGATAGAACTAAGTTGAAGGAAATTAGAGAAGAAGAAAGAGCAAATGGTACACTGTCAAAACTTGCACAATGTGGAACTTCAAGGGCCAAAAGGAAAGCTAACGGTATTCTTGAAAGGTTTAATAGATCCCCCTCCTTAACACACACTGCTTAG 1332 0.4692 MAKRERVRGVSASELKERLRELVKAIVDSDDYVVAAADEAIVTLSALKHLKSPDSLDDFPLPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLDEGHRTCPQTQQVLSHSILTPNYLVRDMIVQWCRERGIELPEPVKDIDGVVTKADRNHLNSLLRKLSLSVSDQKQAAKELRLLTKRMPSIRILVGESSDVIPQLLSPLSSPGTASTDPDLHEDLITTVLNLSIHDDNKKAFAEDPAVISLLIDALKRGTIQTRSNAAAAIFTLSALDSNKYIIGKSGAIKHLLALLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILNKMMDHILVDELLAILALLSSHPRAVEEMGDLGAVPLLLGIIRESASERSKENCVAILYTICFSDRTKLKEIREEERANGTLSKLAQCGTSRAKRKANGILERFNRSPSLTHTA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01010 443 CDD RING-Ubox_PUB 62 114 IPR045210 -
Vian6g01010 443 PANTHER U BOX DOMAIN-CONTAINING 19 433 - -
Vian6g01010 443 FunFam RING-type E3 ubiquitin transferase 338 439 - -
Vian6g01010 443 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
Vian6g01010 443 SUPERFAMILY RING/U-box 50 138 - -
Vian6g01010 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 134 IPR013083 -
Vian6g01010 443 FunFam RING-type E3 ubiquitin transferase 60 134 - -
Vian6g01010 443 FunFam RING-type E3 ubiquitin transferase 191 335 - -
Vian6g01010 443 Gene3D - 340 437 IPR011989 -
Vian6g01010 443 Gene3D - 192 339 IPR011989 -
Vian6g01010 443 SMART arm_5 351 392 IPR000225 GO:0005515
Vian6g01010 443 SMART arm_5 271 311 IPR000225 GO:0005515
Vian6g01010 443 SMART arm_5 229 270 IPR000225 GO:0005515
Vian6g01010 443 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Vian6g01010 443 Pfam U-box domain 62 131 IPR003613 GO:0004842|GO:0016567
Vian6g01010 443 SUPERFAMILY ARM repeat 19 433 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01010 Vian-Chr6 27429102 27430599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01010 123 443 U-box Gene Family AT3G07360 59.215 3.47e-125 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01010 - - gmx:100806619 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01010 6 27429102 27430599 Vian6g01010 6 27429102 27430599 ECH