Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01001 ATGAATGTGAACTACAATGATGTAATTGAGTATGAAGTGGACATCTCAGGCACTATTCATACTCAGATAGAGGAGAGCAGTGTAAGTGGTGAGAGTAGAGGGAGGTCCTCGTCTATAGTCTCAGAGTTTAGACATAGACAAATTGGGGGATTTACCTTGCATAGTGTTGGGGAGTGCCAGCTGAACTACACAAGTATGAGAGCAAATGAGGTTGAGGAAATACCTATGGAGCAAGAGTTGGAGGAGAATGATGCTGTTGCACATTCTGTAGGATTTAGATATCTAAACTCTTGGATGAATGTTGAAGTGGGAGACTCTCTGTGGGATCGGCGTGATTTTACCCATTCAGCCGGCATTTCTACTTCTACAAATAATTATGCTGCTAAAGGCATTGCTTATACTAGGTATGCCTCGGATCGTATATTTGCTCCGTATACTGTTTACAAGGGCAAAGCGGCATTCTCGTTGAGTCCTTGTCTTCCAACTTTTACTAAGTTGGATTCCGGGACTGTTGTAGTTGATCGACGTGGTTCAATCATGATGACTTTCATGCATTCTATTGGAGAACGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCAGCCACTGAAGTTGGTTCTTTGATAAATATGGGCTCTCAAGATTCCTCTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAAGTAAGAAAGAGCTTATCTATTAAGCCCAATGCAAACAGCAATGGATACTTTGTGTCATTGAATGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAGCTGCCGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCCGCAATCCAGAGGCACAGAATCCAGAGGCACAGTGGGCATTCAACGGAAGGGTGGCTCTCAATCTGATTGCAACACGGACGAATATGAGTCGTCAAGTTAA 996 0.4267 MNVNYNDVIEYEVDISGTIHTQIEESSVSGESRGRSSSIVSEFRHRQIGGFTLHSVGECQLNYTSMRANEVEEIPMEQELEENDAVAHSVGFRYLNSWMNVEVGDSLWDRRDFTHSAGISTSTNNYAAKGIAYTRYASDRIFAPYTVYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLINMGSQDSSEFFHDPSMLSSNAGQVRKSLSIKPNANSNGYFVSLNVVNNLLNTKDYFSVPVTAAEFAVMKTACSFALPHIMGWDQITNPQSRGTESRGTVGIQRKGGSQSDCNTDEYESSS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01001 331 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 120 307 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vian6g01001 331 Pfam Whirly transcription factor 147 281 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vian6g01001 331 SUPERFAMILY ssDNA-binding transcriptional regulator domain 138 307 IPR009044 GO:0003677|GO:0006355
Vian6g01001 331 Gene3D Transcriptional Coactivator Pc4; Chain A 133 305 IPR009044 GO:0003677|GO:0006355
Vian6g01001 331 MobiDBLite consensus disorder prediction 297 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01001 Vian-Chr6 27283221 27289544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01001 111 297 Whirly Transcription Factor Family AT1G71260 65.775 6.96e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vian6g01001 Whirly 1.3e-52 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01001 K26561 - gmx:100527314 331.257