Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00998 ATGGAACCTAATGACAACCAACTCACCTCCTTCTTCCACCACCACCACCCCCACCACCACCATCACCACCAGCCCCAACCACCGCCCCAGACCGCCGCAGCCACCACCGCCTCTCCGACCAACGGCCTCTTGCCCAACGCCGACGCCTCACACATACTCTACCCTCACTCCGTGGCCTCGGCTGTCTCGTCGCAGCTGGAACCGGCCAAGAGGAAGCGGGGGCGCCCGAGGAAGTACGGCACGCCGGAGCAGGCTCTTGCCGCCAAGAAAGCCGCTACGGCTTCGTCTCAGTCGTTCTCCGCGGACAAGAAGCCCCACTCACCAACCTTCCATTCTTCTTCATCTTTCACATCCAAAAAATCCCATTCCTTCGCTCTAGGTTCGCTTTCCCTTTCTCAATTTCGCTCGTTAATTCCGCTTCTTTTGTATTCGTATGCTCGTGCGTTTGCTTCTCTCTGTGTTGTTGGATTCTGCGTTCGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTCATGCAACAAAGTAGGCGTGAAATGTGTATTCTCTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACATATGAGGGTCGATTTGAAATTATTTCACTTACTGGATCTTACGTCCGTAATGAGATTGGAACTCGAACTGGTGGTCTAAGTGTATGTTTATCTAACACTGATGGACAAATCATAGGCGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGACAACAAGAAGGATTCTAGCCCAAAAGTTGATGCCTCTGCAAGTAAGTTGCCACCACCACCTGTTAGTGAACCGGTATCAAGTTTAGGTTTCCGCCAATCCGTCGACTCTCCCAGTGGAAATCCAATCCGCGGAAATGATGAGCATCAAGCCATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCAGGGGACGCCTCCCCGGTCCACAGACTGGGCTCGTCCGGATTCAAGAAATTCCAGTTTTGAGCTGACAGGAAGGACAGGTCATGGGTCGCACCAGTCTCCTGAGAATGGGGGCTATGAGCAAATTCCCGATTGA 1167 0.5201 MEPNDNQLTSFFHHHHPHHHHHHQPQPPPQTAAATTASPTNGLLPNADASHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATASSQSFSADKKPHSPTFHSSSSFTSKKSHSFALGSLSLSQFRSLIPLLLYSYARAFASLCVVGFCVRNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNEIGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDSSPKVDASASKLPPPPVSEPVSSLGFRQSVDSPSGNPIRGNDEHQAMGGSHFMIQQLGLQGTPPRSTDWARPDSRNSSFELTGRTGHGSHQSPENGGYEQIPD 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00998 388 ProSiteProfiles PPC domain profile profile. 162 300 IPR005175 -
Vian6g00998 388 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 328 IPR039605 GO:0003680
Vian6g00998 388 Gene3D - 168 293 - -
Vian6g00998 388 MobiDBLite consensus disorder prediction 90 117 - -
Vian6g00998 388 MobiDBLite consensus disorder prediction 340 381 - -
Vian6g00998 388 MobiDBLite consensus disorder prediction 63 117 - -
Vian6g00998 388 MobiDBLite consensus disorder prediction 285 388 - -
Vian6g00998 388 MobiDBLite consensus disorder prediction 28 45 - -
Vian6g00998 388 SUPERFAMILY AF0104/ALDC/Ptd012-like 164 278 - -
Vian6g00998 388 MobiDBLite consensus disorder prediction 1 48 - -
Vian6g00998 388 MobiDBLite consensus disorder prediction 307 324 - -
Vian6g00998 388 Pfam Plants and Prokaryotes Conserved (PCC) domain 168 278 IPR005175 -
Vian6g00998 388 CDD DUF296 167 278 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00998 Vian-Chr6 27254024 27259555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00998 46 388 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 46.027 1.73e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00998 - - gmx:100816781 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00998 6 27254024 27259555 Vian6g00998 6 27254024 27259555 ECH