Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00996 ATGGAAAAAGGGCTGCTTCTTTTGTTGTTGCTGCTGTTGGTCATGGTGCTTTCTGCCTTTGCCATGGATGTGGAATATTCACAGTGCAATTGTGATGAGGAAGGGTTTTGGAGCATCCACAACGTCCTGGTTTGCCAGAAAGTGAGCGACTTTTTCATCGCCATTGCATATTTTTCCATTCCCCTTGAGCTCCTTTACTTTGTCAGTCGCTCCAATGTACCCTTTAAATTGGTCTTCCTTCAATTCATTGCGTTCATAGTTCTCTGTGGATCAACCCATTTACTTAATGCCTATACTTACTACGGCCCCCACTCGTTCCGGTTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCTCTTGTCTCCTGTGCCACTGCCATTTCCTTTCCCACCCTCATACCTCTTCTGCTGAAAATCAAAGTCAGGGAGCTCTTCTTGAGGCAGAATGTGTTGGAATTGGGCCAGGAGGTTGGGATTATGAAGAAACAGGAGGAAGCTAGTTGGCATGTTAGGATGCTCACCTGTGAGATTAGGAAGTCTCTGGATAAGCATACCATCTTGTATACCACACTTGTTGAGCTTTCCAAGGCCTTGGATTTGCACAATTGTGCAGTTTGGATGCCTGATGATGATAGGAAGGAAATGCTCTTGACACATGAGTTGAAACCAAACTCAGCAAGTAGTTTTCACAATTCTATTCCTATTAGTGATCCGGATGTGTTGGACATAAAGAAGAGCAATGGCGTTTGGATTTTGAGGCCTGATTCGAAACTAGGAGCTGCAAGTAGTGGTGGTGGATCTGGGGATTCAGGTGCCGTGGCAGCCATTCGCATGCCCATACTTCATGTTTCCAATTTCAAAGGAGGAACACCAGAGTTAGTTGAAACGGCTTATGCCATACTGGTTTTGGTTCTTCCATATTCAAACTCCAGGACTTGGACCTCCCATGAAATGGAGATAGTGGAAGTGGTTGCTGATCAGGTTGCTGTGGCCTTGTCTCACGCGTCTGTTCTTGAAGAGTCTCAGCTTATGAGCCAGAAACTTGCAGAGCAAAACCGGGCATTACAACAGGCTCAGAAGAATGCAATGATGGCCAGGAAGGCTAGGAGTTCGTTTGAGAAAGTTATGAGTCATGCAATGCGGAGGCCAATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAATATAAGGCCAGAACAGAAGATTGTTATTGACTCAATTTTCAAAGTTAGCAATGCCCTATCACGATTGATTAACGATGTGATGGAGATCTCTGCAAATGACAATGGGACCTTCCAGTTGGAGATGAAACCTTTCAATCTGCATTCAATGATGAGGGAAGTTTCTTGCACTACCAAGTGTTTGTGTATATATAAAGGCTTTGGTCTTGAAGTTGATGTAGACAAGTCTTTGCCTGATCTGGTTATTGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAACATATATGACAGAGGGACTCTCGTATTTCAAGTTTATCTTGAAAGTGATAGTGGAGATAAAGGTGATAAAAATATTGGAAAATGGAGATCAAGCATGCAAAATGCTTATGTACATATAAGATTTAGTTTTCATATAAATGGTATCAGTTCCCAGGCAGATGAAACATTTTCAACAACAAATTGTAATGTTAAAGGGCACTTCAACAATGAATCTAAGGAAGTCCTCAGCTTCAGCATGTGCAAAACACTGGTGCAGCTTGACTGTGGGTTGGTTGAGCAGCTTTTAGCGATGATGCAAGGTAATATTTGGATATCAACTAACACTATGGGTTTGACACAAGGAATGACGCTTCTGCTCAAGTTTCAGTCAGGATCATCACATGGAAGATTCATTCTTGCTCCTAAAGATTTATCAAACTCCCAGTTTAAAGGGCTTAAGATTGTGTTAGCTGATGATGATGATGTAAACAGGACCGTGACCAAGAAGCTTCTTGAGAAACTGGGGTGTCAAGTAACTGCTGTTTCATCAGGATTTGAATGTCTTGGTGCAATCAGTGCCTCTGGTAACTTGTTCAAAATTATTCTGTTAGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAAAAGGATTAGGAAATTACAAAGCCATAATTGGCCCTTGATCATAGCTTTCACTGCTAGTGCAGAAGAGCACATCAAGGAGAGATGCCTACAGGTGGGAATGAATGGATTCATTCGAAAACCTATCCTCCTCCATGAGATTGCAGATGAACTTAGAGCTGTCCTACAACGTACAGGTGAAAATTTGTGA 2313 0.4215 MEKGLLLLLLLLLVMVLSAFAMDVEYSQCNCDEEGFWSIHNVLVCQKVSDFFIAIAYFSIPLELLYFVSRSNVPFKLVFLQFIAFIVLCGSTHLLNAYTYYGPHSFRLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQEEASWHVRMLTCEIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDDDRKEMLLTHELKPNSASSFHNSIPISDPDVLDIKKSNGVWILRPDSKLGAASSGGGSGDSGAVAAIRMPILHVSNFKGGTPELVETAYAILVLVLPYSNSRTWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMARKARSSFEKVMSHAMRRPMHSILGLLSMFQEDNIRPEQKIVIDSIFKVSNALSRLINDVMEISANDNGTFQLEMKPFNLHSMMREVSCTTKCLCIYKGFGLEVDVDKSLPDLVIGDEARSFQVILHMIGYLLNIYDRGTLVFQVYLESDSGDKGDKNIGKWRSSMQNAYVHIRFSFHINGISSQADETFSTTNCNVKGHFNNESKEVLSFSMCKTLVQLDCGLVEQLLAMMQGNIWISTNTMGLTQGMTLLLKFQSGSSHGRFILAPKDLSNSQFKGLKIVLADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISASGNLFKIILLDLHMPEMDGFEVAKRIRKLQSHNWPLIIAFTASAEEHIKERCLQVGMNGFIRKPILLHEIADELRAVLQRTGENL 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00996 770 Gene3D - 433 623 IPR036890 -
Vian6g00996 770 FunFam Ethylene receptor 642 766 - -
Vian6g00996 770 FunFam Ethylene receptor 4 336 430 - -
Vian6g00996 770 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 766 - -
Vian6g00996 770 ProSiteProfiles Response regulatory domain profile. 645 763 IPR001789 GO:0000160
Vian6g00996 770 SUPERFAMILY CheY-like 640 765 IPR011006 -
Vian6g00996 770 Gene3D - 174 332 IPR029016 -
Vian6g00996 770 CDD HATPase_ETR2_ERS2-EIN4-like 475 618 - -
Vian6g00996 770 Pfam GAF domain 185 333 IPR003018 GO:0005515
Vian6g00996 770 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 434 IPR036097 GO:0000155|GO:0007165
Vian6g00996 770 CDD REC_ETR-like 644 759 - -
Vian6g00996 770 Pfam His Kinase A (phospho-acceptor) domain 370 434 IPR003661 GO:0000155|GO:0007165
Vian6g00996 770 SMART REC_2 644 759 IPR001789 GO:0000160
Vian6g00996 770 Coils Coil 339 369 - -
Vian6g00996 770 CDD HisKA 368 429 IPR003661 GO:0000155|GO:0007165
Vian6g00996 770 SMART gaf_1 183 343 IPR003018 GO:0005515
Vian6g00996 770 Gene3D - 333 432 - -
Vian6g00996 770 Gene3D - 644 769 - -
Vian6g00996 770 SUPERFAMILY GAF domain-like 186 336 - -
Vian6g00996 770 Pfam Response regulator receiver domain 646 758 IPR001789 GO:0000160
Vian6g00996 770 PIRSF Ethylen_sen_hybr_HK 1 769 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vian6g00996 770 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00996 Vian-Chr6 27240422 27243402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00996 23 768 Miscellaneous Gene Families AT3G04580 60.026 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian6g00996 GAF 2.1e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00996 K14509 - gmx:100805023 1298.49