Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00991 ATGCACCAAGAAGAAGCAGCCCCCAAAAAACAACAATACCAAGCGTTGGAAGAAATCGGTCGAGGCAAATTCGCCACCGTCTTCCGCTGCTTCCACCCTTCCTCCAACCAATTCTACGCTCTCAAACTCATCAACAACCGCCTCCTCACCGACGCCACCGACCGTCACTGCCTCGAAGTGGAGGCCAAGGCCATGACCTTCCTCTCTCCCCACCCCAACATTCTCAAAATCATCGACGCCTTCCAAGACGCCCACACCTCCACCATCATTCTCCAGCTCTGCCAGCCTCGCACCCTCTTCGACCGCATCGCCGACGGCCCTCTGCCGGAGTCCCACGCCGCCTCCCTCACCAAACAGCTCCTCGAAGCCCTCACCCACTGCCACGCGCTCGGCCTCGCCCACAGAGACATCAAACCCGAAAACCTCTTGTTCGACGAAGCCAACAACCTTAAACTCTCCGACTTCGGCTCCGCAGAGTGGTTCGGTGAGGGCAGGAGCATGCGCGGCGTGGTGGGCACCCCTTATTACGTGGCGCCTGAAGTGATCATGGGGAGAGAGTACGACGAGAAAGTCGATGTTTGGAGCTGTGGGGTTATTCTTTACACAATGTTGAGTGGCATTCCACCCTTCTATGGCGACTCTGCTGCAGAAATTTTCGAAGCTGTTTTAAGGGCTAATCTTAGGTTTCCTTCCACAATTTTTAGGTCTGTGTCTCTTCAGGCTAAGGATCTTCTTAGGAAGATGATCTGTAGAGATCCCTCTAGACGTATATCTGCACTTCAAGCATTGAGACATCCATGGATTTTGAGTAGTGCTGATCTTTCTTGA 828 0.5362 MHQEEAAPKKQQYQALEEIGRGKFATVFRCFHPSSNQFYALKLINNRLLTDATDRHCLEVEAKAMTFLSPHPNILKIIDAFQDAHTSTIILQLCQPRTLFDRIADGPLPESHAASLTKQLLEALTHCHALGLAHRDIKPENLLFDEANNLKLSDFGSAEWFGEGRSMRGVVGTPYYVAPEVIMGREYDEKVDVWSCGVILYTMLSGIPPFYGDSAAEIFEAVLRANLRFPSTIFRSVSLQAKDLLRKMICRDPSRRISALQALRHPWILSSADLS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00991 275 Gene3D Transferase(Phosphotransferase) domain 1 97 274 - -
Vian6g00991 275 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00991 275 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 268 - -
Vian6g00991 275 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00991 275 SUPERFAMILY Protein kinase-like (PK-like) 10 270 IPR011009 -
Vian6g00991 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vian6g00991 275 CDD STKc_CAMK 12 267 - -
Vian6g00991 275 FunFam Maternal embryonic leucine zipper kinase 5 274 - -
Vian6g00991 275 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00991 275 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vian6g00991 275 PIRSF ILK 1 268 - -
Vian6g00991 275 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00991 Vian-Chr6 27204990 27205903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00991 13 275 EF-hand Containing Proteins AT1G50700 39.700 1.38e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian6g00991 Pkinase 2.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00991 - K08794 gmx:547573 414.846