Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00986 ATGAAGACTCCTTGCTGTGAGAGAATGGGAATGAAGAAGGGACCTTGGACTGCAGAGGAAGATCATATATTGGTTTCTCATATTCAACGATATGGCCATGGTAACTGGCGTGCCCTTCCTAAACAAGCTGGATTGTTAAGGTGTGGCAAGAGTTGCAGGCTTCGTTGGATTAATTACCTAAGGCCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAGCTGCATGAAATTCTTGGAAATAGGTGGTCTGCTATAGCGACAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATCCAAAAAAGTGGAGTGCATATAAATGGCAATGCTTCATCGCATATCCTGCAAGAGGCACAAGCAAATAGTTCATCAAGTTCAGGTGCAGTTTCTAGTGCCTATGGAAATGTAATGCTTGACAATTACGGTTTACCCTCAAGGAAGAATCCAATCAATCCACCTACTGTAGGTACTGGATTTTATGGTGCAGTCTCCTCAGATACTTTTGGAGAAACTGAGGACAATCATGATTCTTGTCAGCTAAGTGAAGAAATGGAGTTTTGGTACAATATATTCATCAAATCAGGGCAAACATCACGAGACAATGAAAATCTAGGACATTATTAG 672 0.4077 MKTPCCERMGMKKGPWTAEEDHILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHEILGNRWSAIATSLPGRTDNEIKNFWHTHLKKRIQKSGVHINGNASSHILQEAQANSSSSSGAVSSAYGNVMLDNYGLPSRKNPINPPTVGTGFYGAVSSDTFGETEDNHDSCQLSEEMEFWYNIFIKSGQTSRDNENLGHY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00986 223 FunFam MYB-related transcription factor 12 65 - -
Vian6g00986 223 Gene3D - 12 65 - -
Vian6g00986 223 SUPERFAMILY Homeodomain-like 9 107 IPR009057 -
Vian6g00986 223 CDD SANT 68 111 IPR001005 -
Vian6g00986 223 SMART sant 65 113 IPR001005 -
Vian6g00986 223 SMART sant 12 62 IPR001005 -
Vian6g00986 223 Gene3D - 67 140 - -
Vian6g00986 223 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vian6g00986 223 CDD SANT 15 60 IPR001005 -
Vian6g00986 223 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vian6g00986 223 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Vian6g00986 223 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 177 - -
Vian6g00986 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vian6g00986 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vian6g00986 223 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00986 Vian-Chr6 27096455 27097417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00986 2 207 MYB Transcription Factor Family AT2G31180 45.041 1.44e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian6g00986 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00986 K09422 - gmx:102663040 366.311