Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00982 ATGTCTTCATCTTCTCGTGTTCTTCCCACTCCCCTAGAAAACAAGTATATGAAACCCCCAGATTCTTGTCATCTTTCACCTGCCAGTGATCTGGCTGCAAATTCTGTCTCATCAAATTTAATCACAAGTGCTGGGAAGATCATCTCATCACCCTCTGAATATCCTGATGGCACCCCTTTTCCCTATGCTTCACAGCATGATAGGCAAAATGAAGATCTCCCCTTTGTTTCTCAGACATTGGGTGACAATGTGTCTTCCGAAATACACTCAACAACATTCATTTCTCACCCTCATGAAAGCACAGATATTACCTGGGGACCAGATCCCTTTCAGGATATTCTTGGCTTTCCCGAAAATATTTCTGCCCAGCATGATCAGGTGGTAGACAATGCCTGTTACATAAACGATGAGAATGTCAAAAGAACCGATTTTGGGGAGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTCACCCAAACTGGAGTCAGCTTCTTGGTGATGACAATGCAGCAGAACCAAAACCAAAGGTTCCTCAGTTGCTGGATATACCATCTGGAGAAGTTAATGGCAATTCAGCAGCAACCACACCACAGACTAAGACTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTGTTGAATCTGATGAAAGTTGATGGCCTTACCATCTATCATGTAAAAAGCCACTTGCAGAAATATAGAACTGCCAGATACAAACCAGAGCCATCAGAAGGAACATCAGAGAAAAAGACGACACCAATAGAAGAAATGAATTCTCTAGACTTAAAAACGAGTAAAGGGATCACTGAAGCATTACGATTGCAGATGGATCTCCAGAAGCGACTTCACGAGCAACTTGAGATACAAAGAAAGTTGCAAATTCAAATCGAAGACCAAGGGAAACGTCTTCAGATGATGTTTGAGAAACAAAGAGAGATGGGTGGCAAGAAGGTTAATGGCTCCTCCGGAGAGGCAGCTGCTGCCACCGCCACCACCGCCACCACCGCCACCCCATCAGACAATGTGCATCCTTCTTCTCCTCCAGTAGAAACCTCAAATGAAGGACATGAGAAAATGATGCATGAAGAGAAGAATGGAAGCACAAAGCAAAAAACAAGTGAAGGTGAAGAAGTGATGAATGAAGATGAAGATGAAATTGCACCAGCTACAAAACGGGTGGGTGGGCAAGGCAGCCGCCCTACCTTCTTCGAGATGGCGGCGGCTCAGCAGCTTCCGGCGAGTCTCCGCGCCGCTCTCACTTACTCCATCGGCGTCTTGGCCTTACGCAGACCTTTCCTTCACAAGCTCCTGGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTACTCGAATCTCACACCTTACGAACCACAGATGCTTCTTTTTCGGAATCTCTGTACGGTCTTCGAAGAAGACCGGCCAATATCACCGCCAAAATTGACGATACTGCTGCTGCCACCGCCGGTGGAGGCAGCTTGCGGAGACGCCAGAAAATTCTTTCAGTTGTTTTTTTGGTTGTGTTGCCGTATATGAAATCTAAGTTGCATTCAATCTACAACAGAGAGAGGGAAGCGAGGCTTCAGGCCACTCTATGGGGAGATGAAAATGGGGGATATGATGATGCCCGAGGAGATTATTCTCCGGTGTCAATGCCAACCTCTGACACCGGTGCCTCCGTTACAATGCGTATCACTAAGAGAGTTCAGAAAATTGTAGGGTTTTGCTACCCGTGGTTGCACGCTAGTACTGAGGGTTTGCAATTTGCTTACCAGATGTTGTACTTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTCTGTCGAGCTACTGGGCAAGAGATGATGGATATGTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGCCCCGAATGGTTGAAGACATTGCAAGGAGCATTGCTCAGCTGTACGTACACTGTTCTTGATTATGCACAAACCGGTTTGATTGCAGCAGTGTTTTTCTTTAAGATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCAACAGTATATCCTCCTCCCCCTCCTCCTCCTCCACCAAAGGTACAGAAAGATGGGATACCACTACCACCAGACAGGACAATTTGTCCCTTGTGCTCACAGAAGCGTGTAAATCCATCTGTAGTTACAGTTTCTGGGTTTGCCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACTTTAATGCCTGCAACAGTTGACCAGATTAGGAGACTCTTTCATGATGTCTAG 2385 0.4604 MSSSSRVLPTPLENKYMKPPDSCHLSPASDLAANSVSSNLITSAGKIISSPSEYPDGTPFPYASQHDRQNEDLPFVSQTLGDNVSSEIHSTTFISHPHESTDITWGPDPFQDILGFPENISAQHDQVVDNACYINDENVKRTDFGEWVDQLMSIDDSLHPNWSQLLGDDNAAEPKPKVPQLLDIPSGEVNGNSAATTPQTKTRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVDGLTIYHVKSHLQKYRTARYKPEPSEGTSEKKTTPIEEMNSLDLKTSKGITEALRLQMDLQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGGKKVNGSSGEAAAATATTATTATPSDNVHPSSPPVETSNEGHEKMMHEEKNGSTKQKTSEGEEVMNEDEDEIAPATKRVGGQGSRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPFLHKLLDFEDESFALLMLVLESHTLRTTDASFSESLYGLRRRPANITAKIDDTAAATAGGGSLRRRQKILSVVFLVVLPYMKSKLHSIYNREREARLQATLWGDENGGYDDARGDYSPVSMPTSDTGASVTMRITKRVQKIVGFCYPWLHASTEGLQFAYQMLYLLDATGYYSLALHALGIHVCRATGQEMMDMSSRISKMRNRERERLRGPEWLKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVQKDGIPLPPDRTICPLCSQKRVNPSVVTVSGFAFCYACIFKYITQYKRCPITLMPATVDQIRRLFHDV 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00982 794 SUPERFAMILY Homeodomain-like 199 255 IPR009057 -
Vian6g00982 794 MobiDBLite consensus disorder prediction 255 279 - -
Vian6g00982 794 FunFam Peroxisome biogenesis protein 12 728 792 - -
Vian6g00982 794 MobiDBLite consensus disorder prediction 186 200 - -
Vian6g00982 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 791 IPR013083 -
Vian6g00982 794 FunFam Myb family transcription factor 200 258 - -
Vian6g00982 794 Pfam MYB-CC type transfactor, LHEQLE motif 288 332 IPR025756 -
Vian6g00982 794 MobiDBLite consensus disorder prediction 181 200 - -
Vian6g00982 794 CDD mRING_PEX12 738 791 - -
Vian6g00982 794 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Vian6g00982 794 MobiDBLite consensus disorder prediction 334 403 - -
Vian6g00982 794 MobiDBLite consensus disorder prediction 344 372 - -
Vian6g00982 794 Gene3D - 200 259 - -
Vian6g00982 794 MobiDBLite consensus disorder prediction 374 396 - -
Vian6g00982 794 MobiDBLite consensus disorder prediction 47 66 - -
Vian6g00982 794 SUPERFAMILY RING/U-box 739 790 - -
Vian6g00982 794 PANTHER PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12 411 793 IPR017375 GO:0005515|GO:0005778|GO:0008270|GO:0016558
Vian6g00982 794 MobiDBLite consensus disorder prediction 255 276 - -
Vian6g00982 794 Pfam Myb-like DNA-binding domain 203 254 IPR001005 -
Vian6g00982 794 MobiDBLite consensus disorder prediction 1 23 - -
Vian6g00982 794 Pfam Pex2 / Pex12 amino terminal region 429 704 IPR006845 -
Vian6g00982 794 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 255 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00982 Vian-Chr6 27059941 27067688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00982 87 395 G2-like Transcription Factor Family AT3G04450 45.758 2.62e-75 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian6g00982 Pex2_Pex12 1.6e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00982 6 27059941 27067688 Vian6g00982 6 27059941 27067688 ECH