Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00980 ATGAGTGAGGCCAAAAAGATCTCTAATTTACCTCGTGGATCAGCTAAGGACAGACCTGAGAAAGCATCATCTGCACGGCACCGTGGCCAGATCGAGATGAACCCTGTGAAGACAAGGGCTAAAAAACCCAAATTACTTACTTCGACGAATCATAATGGAGATCTTTGTGTTAAACCTCCGTCAAATCAGGATCAGGATGTGCAAAGTAAAAATCCTGTGCCAGACTGCATCAATAATACCCGTGCTTATAATGGAAATATTACAATCGCTAGTTCTTCACATCTTGAAGAAGTTAAATTATCTTTGAATTGTGAGTCAGCCTTGGCAGGACTAAACTTCCGTATTCCTGATTTGGCTATTGTAATGAAGTTCATGGACAGGAAGTACCTTAGCTCAAGCAAAACTGCTGACCCTCAATTTTCTACGGCAAAGTTATTGGATGATCTTTGTAGCATTTTTCTTAAGCTGGGGCTTCGAAAGGGATCAAATTCCAACCTAGCCAATTCAGATACACAATACGCTAGTCTAGAAGAAAGGAAACCCTTCAATTTTATCAGTGACATGACAAAAGGTTCAGAAAAGGTGAAAATATCGTTAATAGATGAATTTGGCGGTGAAGTCTTGCCAAAATTTAATTACATACCATGCAATATAATATATCAAAATGCTACTGTAACTATTTCTTTGGCCCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGGGACTGTCTTTCTTCATCATTACCATGTGCGTGTGCTCGGGAAACTGGTGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAACTGCTTGCGCGACTATGAAGACTGATCCTAAAGATCATCATTTTGTGTACTGTCAAGAGTGCCCTTTGGAGAAGTCAAAGAATGAGTACATGCCTGAACGATGCAAGGGACATATGGTAAGGAAATTTATAAAGGAATGTTGGAGGAAATGCGGATGTGACATGCTTTGTATGAATCGGATAGTGCAACGAGGTATTGCATGCAAATTGCAGGTGTTCTTAACTCGAGAAGGTAAAGGATGGGGCCTTAGAACGTTAGAAGATTTGCCAAAAGGAACTTTTGTATGTGAATATATTGGAGAGATATTAACCAATATGGAGTTATACGATAGGATAATGCACGAGAGTGGGAATGACAGACATACATATCCAGTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAACGTAGGAAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCCGTTGAAATAGAGAGTCCAGATCACCATTATTATCATCTTGCCTTCTTTACCAATAGAAATGTGAGTGCGTATGAGGAATTGACTTGGGATTATGGTATTGATTTTGATGATAAAGATCATCCTATTAAAGCATTTCGGTGTTCTTGTGGAAGCGCCTTCTGCCATGATAAGAAACAAAAAGGGAAAGGAAAAAAAAAAAAATCAGGTTCTTGA 1548 0.3947 MSEAKKISNLPRGSAKDRPEKASSARHRGQIEMNPVKTRAKKPKLLTSTNHNGDLCVKPPSNQDQDVQSKNPVPDCINNTRAYNGNITIASSSHLEEVKLSLNCESALAGLNFRIPDLAIVMKFMDRKYLSSSKTADPQFSTAKLLDDLCSIFLKLGLRKGSNSNLANSDTQYASLEERKPFNFISDMTKGSEKVKISLIDEFGGEVLPKFNYIPCNIIYQNATVTISLARISDEGCCSDCSGDCLSSSLPCACARETGGEFAYTPQGLLKEEFLTACATMKTDPKDHHFVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCDMLCMNRIVQRGIACKLQVFLTREGKGWGLRTLEDLPKGTFVCEYIGEILTNMELYDRIMHESGNDRHTYPVTLDADWGSEKGLKDEEALCLDATYNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHLAFFTNRNVSAYEELTWDYGIDFDDKDHPIKAFRCSCGSAFCHDKKQKGKGKKKKSGS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00980 515 SUPERFAMILY SET domain 195 499 IPR046341 -
Vian6g00980 515 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 34 512 - -
Vian6g00980 515 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 16 515 IPR025776 -
Vian6g00980 515 FunFam SET-domain containing protein lysine methyltransferase family protein 188 502 - -
Vian6g00980 515 Pfam Pre-SET motif 189 335 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian6g00980 515 MobiDBLite consensus disorder prediction 10 39 - -
Vian6g00980 515 Gene3D SET domain 188 502 IPR046341 -
Vian6g00980 515 MobiDBLite consensus disorder prediction 43 70 - -
Vian6g00980 515 ProSiteProfiles SET domain profile. 343 477 IPR001214 GO:0005515
Vian6g00980 515 ProSiteProfiles Pre-SET domain profile. 237 340 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian6g00980 515 CDD SET_SETDB-like 209 477 - -
Vian6g00980 515 MobiDBLite consensus disorder prediction 1 70 - -
Vian6g00980 515 Pfam SET domain 355 477 IPR001214 GO:0005515
Vian6g00980 515 SMART preset_2 185 327 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian6g00980 515 SMART set_7 343 483 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00980 Vian-Chr6 27030026 27041041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00980 184 500 Su(var)3-9 homologs AT5G04940 28.190 2.20e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian6g00980 Pre-SET 5.1e-16 No_clan