Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00968 ATGATTTCGTCAATTTCATGGGTACCAAAAGGAGTATCAAAACCAGTTATCTACATGACCAAAGCCATGAAGGACGTCCTCAAGGAATTTTATGGTGATGAGGATCCATATCTCAGCAAAGATAAAAATGAATATGATTATGATTATGAGGAACTTTGCAATCCCATTTATCCAACGGATTCTCTCATTGTTTGTGCACGGCCAAAGGTAGAAGGTAGTGATAGTTTTGGTATTCTTGAGGTTTTGAGACTTAATCCCGACATCCGACATCCAGCATCGCCGTTTACTCACCATGAAATCCTAATTTCAGCATTGCCGCTTTGCTTAGCTTGGCTTGATTGTCCCCTTCAAGGAGGAGAGAGAGGGAACTTCTTAGCTGTTGGTTCAATGAAACCTAATATTGGAATTTTTAACATTGACGTTGGGATGGAAGGGGAGAGCCATGTTCAAGCTGTTGCTTGGAATCTCCATTCACCGCGGCTTCTTCTTAGTGGTTCGTTTGATGGTACTGTTTTTCTGAAGGACGGGAGGATGCCATCAAACGATGGTTGTGAGTGGAAACTCAATGCTAAAGTAAAGAGCTTGGCATGGGATCCACACTCTGAGCACTCTTTTGTGGTGAGTCTTGCAAATGGTACTGTTAGATTGATTGATGTTCGGACTGCCAAGTCAGATTCCGGATCTGAGTTCAATGCTAATGAACACGGCAAAGCTGTTACATCAGTATCCTACAATCCGTCAGCTCCTAATCTTCTCGCCACTGGATCGGAGGACGAAACGGTAAAGCTTTGGGATTTGTCACACAACCAACCTTCTTGTGTGGCCTCTTATTCTCCAAAAGTAGGGCCTGTCTTTTGTATTTCATTCTCGGAAGAAGACCCTTTTTTTTTGGCTATAGGAGGCTCAAAGGGAAATTTACGAATATGGAACCTTCACCAGGATTCTGGAATTTCTCAAAGATATGGGAATTACATGAAGTAA 981 0.4241 MISSISWVPKGVSKPVIYMTKAMKDVLKEFYGDEDPYLSKDKNEYDYDYEELCNPIYPTDSLIVCARPKVEGSDSFGILEVLRLNPDIRHPASPFTHHEILISALPLCLAWLDCPLQGGERGNFLAVGSMKPNIGIFNIDVGMEGESHVQAVAWNLHSPRLLLSGSFDGTVFLKDGRMPSNDGCEWKLNAKVKSLAWDPHSEHSFVVSLANGTVRLIDVRTAKSDSGSEFNANEHGKAVTSVSYNPSAPNLLATGSEDETVKLWDLSHNQPSCVASYSPKVGPVFCISFSEEDPFFLAIGGSKGNLRIWNLHQDSGISQRYGNYMK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00968 326 Pfam WD domain, G-beta repeat 234 265 IPR001680 GO:0005515
Vian6g00968 326 Pfam WD domain, G-beta repeat 273 310 IPR001680 GO:0005515
Vian6g00968 326 Gene3D - 91 321 IPR015943 GO:0005515
Vian6g00968 326 SMART WD40_4 181 218 IPR001680 GO:0005515
Vian6g00968 326 SMART WD40_4 270 310 IPR001680 GO:0005515
Vian6g00968 326 SMART WD40_4 225 265 IPR001680 GO:0005515
Vian6g00968 326 SMART WD40_4 130 175 IPR001680 GO:0005515
Vian6g00968 326 SUPERFAMILY WD40 repeat-like 106 313 IPR036322 GO:0005515
Vian6g00968 326 PRINTS G protein beta WD-40 repeat signature 252 266 IPR020472 -
Vian6g00968 326 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Vian6g00968 326 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Vian6g00968 326 ProSitePatterns Trp-Asp (WD) repeats signature. 252 266 IPR019775 -
Vian6g00968 326 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 33 141 IPR044285 GO:0006364
Vian6g00968 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 274 IPR001680 GO:0005515
Vian6g00968 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00968 Vian-Chr6 26888984 26891864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00968 161 313 U-box Gene Family AT2G33340 28.931 5.25e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00968 K14791 - gmx:100807947 262.307