Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00957 ATGACTACTGCTATGGAGGTAGAGCGTGACAAGTACAAGATGATCGATTTCGAAGAAACCGAGTTGCGACTCGGGTTGCCGCTGAGTTCAAACGAAAGCGAGTCCACGCTCATCAGAAACACTTCCGGTTGTTCCTTTACCGGGAAGAGAGGGTTTTCCGATACAAGCAGCGGTAGCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAACAATGTCTCCGCCTCTTCCTCTTCTGACATGGCCAAAGAAAACAACGCTTCTGCAGCTGCTAACATCACCACACCTCCTTCTCCTGCTCCTGTCAAGGACCCAGCAAAGCCACCTGCAAAGGCACAAGTGGTAGGTTGGCCTCCTGTGAGATCATTCAGAAAGAACATCGTGAACAATGTTCAAAAGGGTAACAACAGCAGCAACAAAGAGGGGGTAAAAGGTGGCGCAAGTAACAGCAGCAGTGGGAACACAGGAGCAGCTTTTGTTAAGGTGAGCATGGACGGTGCTCCTTATCTACGTAAGGTAGATTTGAAGGTGTACAAGAGCTACCAAGAGCTGTCGGATTCCCTTGCAAAAATGTTCAGTTCATTCACCATTGACAAGTGTGGATCCCAAGGCATGAAAGACTTCATGAACGAGACCAAATTGATTGATTTTCTCAACGGCTCTGATTACGTTCCCACCTACGAAGACAAAGATGGAGACTGGATGCTCGTCGGTGACGTACCCTGGGAAATGTTCGTGGAATCCTGCAAGCGTCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGCACCGAGAGCAGTGGAAAAGTGCAGGAACAGAAGCTAG 828 0.4855 MTTAMEVERDKYKMIDFEETELRLGLPLSSNESESTLIRNTSGCSFTGKRGFSDTSSGSVDLKLNLSSTSNNVSASSSSDMAKENNASAAANITTPPSPAPVKDPAKPPAKAQVVGWPPVRSFRKNIVNNVQKGNNSSNKEGVKGGASNSSSGNTGAAFVKVSMDGAPYLRKVDLKVYKSYQELSDSLAKMFSSFTIDKCGSQGMKDFMNETKLIDFLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCRNRS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00957 275 MobiDBLite consensus disorder prediction 29 114 - -
Vian6g00957 275 ProSiteProfiles PB1 domain profile. 157 257 IPR000270 GO:0005515
Vian6g00957 275 MobiDBLite consensus disorder prediction 131 154 - -
Vian6g00957 275 SUPERFAMILY CAD & PB1 domains 148 256 - -
Vian6g00957 275 MobiDBLite consensus disorder prediction 29 95 - -
Vian6g00957 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 262 IPR003311 GO:0005634|GO:0006355
Vian6g00957 275 FunFam Auxin-responsive protein 152 267 - -
Vian6g00957 275 Gene3D - 152 269 - -
Vian6g00957 275 Pfam AUX/IAA family 19 266 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00957 Vian-Chr6 26787479 26789627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00957 139 260 B3 DNA Binding Superfamily AT5G20730 28.689 1.04e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vian6g00957 AUX_IAA 7.1e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00957 K14484 - gmx:100796888 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00957 6 26787479 26789627 Vian6g00957 6 26787479 26789627 ECH