Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00951 ATGGAGTTTCCTCCGAACCTTTTGCCAGACGAAGCGAGCCCAGAATGGTTAAACAAAGGAGACAATGCGTGGCAGTTAATGGCAGCGACGGTGGTGGGTCTACAAAGCATTCCAGGGCTGGTTATTCTCTACGGAAGCCTCGTCAAAAAAACATGGGCCATTAACTCCGCTTTCATGGCCTTCTACGCCTTCGCGGCGGTTCTTCTCTGCTGGGTTGCGTGGGGTTTCCGCATGTCATTCGGTGAGAAAATGCTGTTCTTCTTGGGGAAACCAGGGGTGGCGCTGGACCAGGAGTTTCTTCTGGGGAAAGCGTTTCTGGGGCTCTTTCCCACCGCTACCATGGTGGTTTTTCAGGGCGTGTTCGCGGCGATTACTTTGATCCTCATAGCTGGGGCGTTGCTCGGGAGAATGAACATCCTTGCGTGGATGCTGTTTGTTCCTCTTTGGGTTACTTTTTCGTACACGGTCACTGCGTTTAGCATCTGGTGCCCCGAAGGATGGTTGGCGAAGCTTGGAGTTATTGATTTCTCCGGTGGATATGTCATTCACCTCTCTGCCGGAGTTGCCGGTTATACTGCAGCTTATTGGGTGGGTCCAAGATGTGAGAAGGAGAGAGAAAGGTTTCCATCAAACAACATGATTGTAGGGCTCGCCGGCGCCGGCCTGCTTTGGATGGGTTGGAGTGGGTTCAACGGTGGTGGTCCGTTCGTGGTGAGCACGGTGGCTTCTCTGGCCGTCCTTAACACACACGTGTGTGCCGCCGCTAGCATCATGGTGTGGGTTCTACTTGACACTTTCTACTTTGGTAAGCCCACCGTGTTTGGCGCCATACAAGGCATGATCACCGGCCTCGTTTGCATCACACCTGCTGCAGGAGTTGTGCAGGGTTGGGCAGCGATCTTGATGGGTTTGATCTCAGGAAGCGTTCCCTGGTACACAATGATGATCCTCCATAACAAGGTACCCTTCTTGAGACAAATCGACGACCCCATGGCGGTGTTCCACACCCACGCCGTCGCCGGTGCTCTCGGCGGAATCCTCACCGGCCTCTTCGCCGTCCCTAAACTCTGCCGTCTCTTCTACATGGTCCCCGATTGGGAAAAATACATTGGCCTGGCCTATGGCCTCAAGAACGGTGCAACTGGAGCGGGTTTAAGACAAATGGGCATCCAAATCGGAGCCATAGTTTTCGTCATCATCTTCAACTTCGTTACTACAAGCTTGATTTGCTTGCTGGTGGGGATCTTGGTACCTCTCAGACTTCACACCGATGCGCTGCAAATGGGTGACAAGGCAATGCATGGAGAAGAGGCTTTCGCTTTGAATAATGCTGACAATGCCAAGTTTGAGAATCTCAACCACAACAAAGTTTATGATACTCAAGACTTTTCCTTCGTTAGAGACCCAAAACCATTGACTCAACTTCAAATGGTATGA 1437 0.5191 MEFPPNLLPDEASPEWLNKGDNAWQLMAATVVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVAWGFRMSFGEKMLFFLGKPGVALDQEFLLGKAFLGLFPTATMVVFQGVFAAITLILIAGALLGRMNILAWMLFVPLWVTFSYTVTAFSIWCPEGWLAKLGVIDFSGGYVIHLSAGVAGYTAAYWVGPRCEKERERFPSNNMIVGLAGAGLLWMGWSGFNGGGPFVVSTVASLAVLNTHVCAAASIMVWVLLDTFYFGKPTVFGAIQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMILHNKVPFLRQIDDPMAVFHTHAVAGALGGILTGLFAVPKLCRLFYMVPDWEKYIGLAYGLKNGATGAGLRQMGIQIGAIVFVIIFNFVTTSLICLLVGILVPLRLHTDALQMGDKAMHGEEAFALNNADNAKFENLNHNKVYDTQDFSFVRDPKPLTQLQMV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00951 478 Gene3D Ammonium transporter AmtB like domains 8 458 IPR029020 -
Vian6g00951 478 Pfam Ammonium Transporter Family 23 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vian6g00951 478 PANTHER AMMONIUM TRANSPORTER MEP2 6 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vian6g00951 478 SUPERFAMILY Ammonium transporter 16 421 - -
Vian6g00951 478 NCBIfam ammonium transporter 21 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vian6g00951 478 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005886
Vian6g00951 478 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005886
Vian6g00951 478 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Vian6g00951 478 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005886
Vian6g00951 478 FunFam Ammonium transporter 6 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00951 Vian-Chr6 26737690 26739328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00951 112 462 Inorganic Solute Cotransporters AT2G38290 54.701 1.41e-124 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00951 K03320 - gmx:100782944 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00951 6 26737690 26739328 Vian6g00951 6 26737690 26739328 ECH