Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00943 ATGCACTGTTTCTACTCCTCCGATGTCAAGGGCTTTCGTTTGAGCCAATCGGTTTTGGGTTCTGAGTTGCAAATACCAAGATCTTTCACTAAGTTTTTCTCTGGAATCCCACCATGTAAGGTCATTCTTGTAGAACACGATGGAAAACATTGGGATGTTAAGGTGGAAAAAATCGAAGGTCGTTTGGTTTTTAAAAGTGGGTGGCAGGAATTTTCCAAGGAGAAAAATTTAGAAGATTGCGACTTTTTGGTTTTTGAGTATGATGGTAAAACTACTTTTAATGTGAAGATATTTGGGAAAACTGGGTGCAGGAAAGTGGCTGCACCTCCAAAAGTTGTTCCCATTGTGGATTTGGAAGAAGATTCTGATGAGCATAGTCATGAAATCCAGAACAATGGTGTACGGAAACGTCCACTCCCAAGTCCCAAAACAAATGTGAAATCAGAAGGTGCATGTCCATTCAAAGAAGCTCAGCGCAAATCAAAAAGAATAAAGGAAGGAAAAGATAAAATGAATGACGAGAAACCTGCGCTTACAAAGCATGTTCCATTGGAGAATGCTCATTTTCAAATATGTTTTGATACTCCATATAAACTAAAAAGAGTGGAATTTCCTAGAAAATTGCTTAAAATGAATAATATCAAGCTGCTTCGGTCTATAACTCTGAGGGATGAGAATGGCAAGTCATGGCTGGTGATGATCAATTCCTCATCGAATTATGATCGTAGTTTTTTGGGAAGTGGATGGATGGCTTTCAAGGAGAGTAAAAACATTCAAGTAGGGTCTCGATGTGATTTTCAGTTTCTTGTTGACAAAGCAAATGTGGCCAGAGAACTGCTTGTGCGCGTGCTTTCGAAGATAAAGAAGAAATAG 873 0.3895 MHCFYSSDVKGFRLSQSVLGSELQIPRSFTKFFSGIPPCKVILVEHDGKHWDVKVEKIEGRLVFKSGWQEFSKEKNLEDCDFLVFEYDGKTTFNVKIFGKTGCRKVAAPPKVVPIVDLEEDSDEHSHEIQNNGVRKRPLPSPKTNVKSEGACPFKEAQRKSKRIKEGKDKMNDEKPALTKHVPLENAHFQICFDTPYKLKRVEFPRKLLKMNNIKLLRSITLRDENGKSWLVMINSSSNYDRSFLGSGWMAFKESKNIQVGSRCDFQFLVDKANVARELLVRVLSKIKKK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00943 290 PANTHER B3 DOMAIN-CONTAINING 24 272 - -
Vian6g00943 290 CDD B3_DNA 197 261 IPR003340 GO:0003677
Vian6g00943 290 SUPERFAMILY DNA-binding pseudobarrel domain 187 269 IPR015300 -
Vian6g00943 290 MobiDBLite consensus disorder prediction 122 149 - -
Vian6g00943 290 CDD B3_DNA 14 98 IPR003340 GO:0003677
Vian6g00943 290 SMART B3_2 9 101 IPR003340 GO:0003677
Vian6g00943 290 SMART B3_2 189 287 IPR003340 GO:0003677
Vian6g00943 290 Gene3D - 182 284 IPR015300 -
Vian6g00943 290 Gene3D - 11 103 IPR015300 -
Vian6g00943 290 Coils Coil 154 174 - -
Vian6g00943 290 Pfam B3 DNA binding domain 17 100 IPR003340 GO:0003677
Vian6g00943 290 Pfam B3 DNA binding domain 198 285 IPR003340 GO:0003677
Vian6g00943 290 SUPERFAMILY DNA-binding pseudobarrel domain 16 103 IPR015300 -
Vian6g00943 290 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Vian6g00943 290 ProSiteProfiles B3 DNA-binding domain profile. 187 287 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00943 Vian-Chr6 26663913 26672131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00943 6 285 B3 DNA Binding Superfamily AT5G66980 29.841 7.26e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian6g00943 B3 1.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00943 - - var:108345771 531.561