Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00940 ATGACGAAAGAGCTTCTGCAGCTTCCTCTGCAGCAGCTCCAACGACGGTGTCGTTTTGAACTTCCTTTGCCAATGTTGAACTTCGCATTCTCAGATTCGTTTGTGGCTATGAATTACTACGTGGTTAACCTTCATAAGAATCGGATTTGCTTGTATCTAGGAGAGGGAAATCTGTTGCTAACTGATAACATGGAGCAGTACGAAGTGCTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCTGGAGATGGATCTCCTCTCCAAATTAAGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTGGTGGTGTTATGTTCCCTGAGGAGAAACTATGTAAGTGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCATGCGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTTGTCGGAACTCCTAGCTATATGTGTCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGTCCCTGATTAACAAAATTAACAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTCTTTAGGCAAGGAAAAGCTCACCGAAATCGTGGTCTTGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGAACCAACATCTTCAACCTTATGTTCTTAAGGTCCATTTCAAAATCAATAGCCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCAAGAATCCAACTACGTGAAGAAAGCAAGATTTTTGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGGTATAAGTGGCATTCTATTAGCAATGATAGGACTTTAAATCCCAATGTATCAGGAGCAGAGGTAGATTCTCTATGCTCTACGCTAGAAATAGACTGTACTCCTGATAATATAAATCAAAGATTTGCTAAACTTTCTATTGGAGACAACCACGATTTGAAGTCACGGCATAATTCAGTTGTTTCAAGAACTTCTAGTAATGCCAGGACTCCTACGCTAACTGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGCTATCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAACATGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTCCCACGAAGTTGTGCCATTCAGCTGCCTCCTTGCAGGTCCAGTACTGGTTTACTTTGCCATGTAACTTCTCCCAATATTTCAGTCAATTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGGCACAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAATGATTCAACATTGGTAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTACGCCAGGATGTACGTATGCTTGGCAGGGAATCAAGCGCAGCGTGCTCAAGAAAAACAATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAACAGCTGTAGCATCAAGCCACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACATCATCATTCCAACAAAGGGCGGAGGCATTAGAAGGTCTCCTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGGTATGGAGAACTCGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGAGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCCGAGAACAATCGACTTAA 2082 0.4246 MTKELLQLPLQQLQRRCRFELPLPMLNFAFSDSFVAMNYYVVNLHKNRICLYLGEGNLLLTDNMEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMDLLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAGGVMFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQSLINKINKSIVAPLPTKYSGAFFRQGKAHRNRGLVKSMLRKNPELRPSAAELLGNQHLQPYVLKVHFKINSPRRSTLPGLWQESNYVKKARFLKSEDDRVSVSGYKWHSISNDRTLNPNVSGAEVDSLCSTLEIDCTPDNINQRFAKLSIGDNHDLKSRHNSVVSRTSSNARTPTLTASKASATPKKSMLSSKNHKTLPVSHNMKQPVHTTRRASLPFPRSCAIQLPPCRSSTGLLCHVTSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSSGSPPCGNDSTLVDKCTIKVCDTSYVTPGCTYAWQGIKRSVLKKNNEDKSGSSDQNATAVASSHNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQST 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00940 693 Gene3D Phosphorylase Kinase; domain 1 45 146 - -
Vian6g00940 693 FunFam Serine/threonine-protein kinase Nek2 64 146 - -
Vian6g00940 693 ProSiteProfiles Protein kinase domain profile. 67 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00940 693 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vian6g00940 693 Pfam Protein kinase domain 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00940 693 MobiDBLite consensus disorder prediction 434 466 - -
Vian6g00940 693 Gene3D Transferase(Phosphotransferase) domain 1 147 342 - -
Vian6g00940 693 SUPERFAMILY Protein kinase-like (PK-like) 64 331 IPR011009 -
Vian6g00940 693 MobiDBLite consensus disorder prediction 597 616 - -
Vian6g00940 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vian6g00940 693 SMART serkin_6 67 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00940 693 CDD STKc_Nek 66 330 - -
Vian6g00940 693 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 64 643 - -
Vian6g00940 693 MobiDBLite consensus disorder prediction 431 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00940 Vian-Chr6 26645051 26651038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00940 44 367 MAP Kinase Kinase Kinase AT1G53570 28.035 3.33e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vian6g00940 Pkinase 3.7e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00940 K08857 - gmx:100796019 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00940 6 26645051 26651038 Vian6g00940 6 26645051 26651038 ECH
Vian6g00940 6 26645051 26651038 Vian3g01862 3 21545115 21550140 PCT