Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00939 ATGTTCGATGGAGTATCAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTTCACTTGTCTTTCCCTCTTCATGCCTCTTCAACTTCCCCAACTACCTTCTTACCCTTTGATCCCTATAACCCTTCTCAATCTCAGCAACACCATTTTCCACTCCAAACCAATCTCTTTCACCCATTGCACCCTCCTTCTCCTCCTACCCACAAACACAAGCTTCCTTCAATCCACATTCACACTCACCAAACTCAATTACCAGACCTAACCGATTCCTGGTCCAACGATGAACTCCTTGCACTTTTCAGAATCAGATCTACCATGGAAAATTGCTTCCCGGAGCACACATGGGACCATGTCTCCAGGAAGCTGGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTGGATATTTCGACAACGTTAGTAACTACGGCAAGAACAATTACCGGTTCCTTAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATTCGGGTGGTGGTGGTGGTGGTGAATGTGACGGTGGTGATGATGGAATCGTGAGGAGTGAAAAGACCCTCCTCCACCTTGGAGCAGACAACATGGGCCATCGACAATGTGATGGAACAGATGATAAGGTTGTGGTGGAGAAGTCAAAGGAGCGAAAGAGGAAGAGGCGTGACAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTTTTGTGAACAAGATGATGGCTCAACAGGAAGAGATTCACAACAGGCTCCTGGAGGACATGGTGAAAAGGGACCAAGAGAAATTTGCCAGAGAGGAAGCATGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTTGACATCATGGCACAGGAGCAAGCTATCGCCGGAGACAGACATGCCACCATAATTGAATTCTTAAAGAAATGTGCAACGACAACAATAACAACGTCGACAACTTCATCTCCTCCAAGCCAAAATGCCAACGGTTCCAGTCTTCCAAATCGTTCACTATTACACTCACTAAACCCTAATAGTCCTTCCAATGAAGACAACAACCTCGATCCAACACCAACGCTTCTGAATCATGATGAAACTAAGTTAAGAGCAGAAAACCCTAGTTCGAGTGAGACATTATTACAAGTTCCTTCTTCCTCCAACTCATCCCCAACTCCCCACAACCCTAGTTCTTCCCTCAATAGCCAAAACAATACTATCCCATTAGAGTCAAATTCAGTTTCCACGTACAAGACAACCTCAACAACCCCACCAGGAAGCACTGAGAATTCGAAAGATGATGTTGGGAGAAGATGGCCAAGGGATGAAGTGCTAGCACTGATAAACCTGAGGTGCACGAGTGTAAGTAACAACAACAACAACAACAGCAGTGAAGAAAAAGAAGGAAATAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGGTGGGATACAAGAGAAGCGCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACTAAGGATGTTAACAAGAAAAGGTCCCTTAATTCTAGGACCTGTCCCTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAAATCGTGGCAGCACAGTCGGAAAGAGAAGGGAACTACATGAGTCCAACCGCGAATTCCGGCCAAGTGCCACCGGATGTTGATGATGAAGATGAGTCTTCTCATGTGGGGTCTGGTGGTTTGGATCATTATGCATGTTAA 1749 0.4574 MFDGVSDQFHQFIAPRTTLPLHLSFPLHASSTSPTTFLPFDPYNPSQSQQHHFPLQTNLFHPLHPPSPPTHKHKLPSIHIHTHQTQLPDLTDSWSNDELLALFRIRSTMENCFPEHTWDHVSRKLAELGFKKSAEKCKEKFEDESGYFDNVSNYGKNNYRFLSELEELCQNPDSGGGGGGECDGGDDGIVRSEKTLLHLGADNMGHRQCDGTDDKVVVEKSKERKRKRRDRFEMFKGFCESFVNKMMAQQEEIHNRLLEDMVKRDQEKFAREEAWKKQEMEKMNKELDIMAQEQAIAGDRHATIIEFLKKCATTTITTSTTSSPPSQNANGSSLPNRSLLHSLNPNSPSNEDNNLDPTPTLLNHDETKLRAENPSSSETLLQVPSSSNSSPTPHNPSSSLNSQNNTIPLESNSVSTYKTTSTTPPGSTENSKDDVGRRWPRDEVLALINLRCTSVSNNNNNNSSEEKEGNNKGPLWERISQGMSEVGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVAAQSEREGNYMSPTANSGQVPPDVDDEDESSHVGSGGLDHYAC 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00939 582 MobiDBLite consensus disorder prediction 373 430 - -
Vian6g00939 582 MobiDBLite consensus disorder prediction 317 438 - -
Vian6g00939 582 FunFam Trihelix transcription factor GTL2 439 508 - -
Vian6g00939 582 MobiDBLite consensus disorder prediction 454 469 - -
Vian6g00939 582 PANTHER FI21293P1 79 561 - -
Vian6g00939 582 MobiDBLite consensus disorder prediction 317 361 - -
Vian6g00939 582 Pfam Myb/SANT-like DNA-binding domain 92 156 IPR044822 -
Vian6g00939 582 Pfam Myb/SANT-like DNA-binding domain 437 529 IPR044822 -
Vian6g00939 582 MobiDBLite consensus disorder prediction 548 582 - -
Vian6g00939 582 FunFam Trihelix transcription factor GT-2 94 150 - -
Vian6g00939 582 CDD GT1 437 510 - -
Vian6g00939 582 ProSiteProfiles Myb-like domain profile. 438 503 IPR001005 -
Vian6g00939 582 MobiDBLite consensus disorder prediction 454 475 - -
Vian6g00939 582 Gene3D - 439 508 - -
Vian6g00939 582 Gene3D - 94 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00939 Vian-Chr6 26632331 26634582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00939 232 535 Trihelix Transcription Factor Family AT5G28300 47.883 2.89e-78 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian6g00939 Myb_DNA-bind_4 4.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00939 - - vra:106774627 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00939 6 26632331 26634582 Vian6g00939 6 26632331 26634582 ECH
Vian6g00939 6 26632331 26634582 Vian3g01311 3 14521830 14523984 PCT