Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00931 ATGAATGAACTTCAAACAGATTCCTCTGCCTTTTCGGAGTTCGTCGAAGTTGATCCAACTGGCAGATACGGCAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTGTATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAAGTCAAGTTGTATGATTTTCTGCAGAGTCCCGAAGATCTCGAGAGGCTTTACTGTGAAATTCATCTTCTCAAAACGCTGAAGCACAAAAACATAATGAAGTTTTACACGTCTTGGGTTGATACTGCTAATAGGAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGGCAGTATAGACAAAAGCACAAAAGAGTTAACATTAGGGCTGTGAAGCATTGGTGTAGACAGATCCTGAGAGGGCTTCACTATCTTCATAGCCATGATCCACCTGTGATCCATAGAGATCTAAAATGTGATAATATTTTTGTGAATGGAAACCAAGGGGAAGTTAAGATTGGGGATCTTGGGTTGGCAGCAATTCTGCGCAAGTCTCATGCTGCTCATTGTGTAGGAACGCCTGAATTCATGGCACCAGAAGTTTATGAAGAATCCTATAACGAATTAGTTGACATATATTCCTTTGGGATGTGTGTGTTAGAAATGGTTACATTTGAATATCCTTATAGTGAATGTAGTCATCCAGCGCAAATCTACAAGAAAGTTATTTCTGAGTGGCAAGCTATAAACGGAATTTTACATTTCCAGGGGAAGAAACCAGAAGCCTTGTATAAAGTGAAAGATCCAGAAGTGCGAGAATTTGTTGAGAAATGTCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCAGATTGATGATTATGAGTATGATTTGGGGCCTGTGGAGAGTGGAGCATTTGATGGCAAGGGTCCTATTATCCATCAGCCATTTTTTAATCTTCACCGAAGCTATAGTAACATGAGTACTGAACACTCAAATTGCTTTGAATATGAAGGAGACTGGATTTCTCATCCGGTTGAGATTGAACCTAATGGAATTGAACTTTTCAAGTGCCGTGATGATGATGAAGCGTCCGAAGAAGATGTTGACATAAGCATCAAGGGAAAGAAGAAAGATGATGGTGGAATTTTCTTGAGATTAAGAATTGCAGACAAAGAAGGACATATTCGAAATATTTATTTCCCATTTGACATAGAGATGGACACAGCATTAAGTGTAGCAACTGAAATGGTAGCAGAACTTGACATTACTGATCAGGATGTTACCAGCATAGCTGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAAACCAGGACCAGGAATTGAAGAACCTAACCATTTTGTAAACAATTTCTTTTGTCACAATTGTGTGTCTAATGATGCTTCTGGTGGGAGTATTATGGATTTTCATTCACATAATCAAGTTGGAAAGAACTCTCAGCTTCCTCAATGCTGTAGGCATGGTTGTACTTCGATGCATGGCCGGTTCGAGGAGATAACATTCCCATCTGAGTATGACAATCATGTTAGAGGGGACACAGTCACATCTATTGAATCAAACCAACCGGAGAGCCAGCACTATCAGGAGCTATGGAATCATCAAGAAAGTTGTGAACTGAGTTCAGTAGAGTCTGATCAAAGCCATTCTGATGAGCAATATGAACAGCTAGATAAATCAGTATTGGCAGAAGACAAAGGAAAGGGTGTTTTGGAAAACAAGTTTGCACATGATCCAGGAAACCCCCCACCAAGTTTATCTGGGAATTATTTGTCTACTATCAGTTTGTTATGTCCTGGTTCAGGGAGTGAATATGAGATAGAGGTTCAACAAGAACTGAGATGGCTCAAAGCAAAACTCCAAATGGAGTCAAGGGATCTCAGGGATAAAAGGTTTGGTGCAGCAGCCAAATCTTCTTCACATTCTAGTAACAAAGTCCACAAAACAGAACAAGGCATTGTGCTACCATTGACAGAAACAGTAAACGGAGTGAAAAATGGAATTCACTTGAAACCCCTCTGTAATTTCTGGGATTATGATTCCAGTTACCGTTCTCTAATCCAAAAGAGCCACTCCAATTTGGACATCCAAAGTCTCCAAAATTGTGAGGTGATGTGTTCTCACAAAGAAGGTATTATTAGGGCTACTGCCAAGAGTTTTTACACAGGGTCACTTCGAGACACTCCATACAGAACAGTTTCCCTTCCCGTTGATGCTGTGGATATATAA 2271 0.4038 MNELQTDSSAFSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVISEWQAINGILHFQGKKPEALYKVKDPEVREFVEKCLATVSLRLSARELLDDPFLQIDDYEYDLGPVESGAFDGKGPIIHQPFFNLHRSYSNMSTEHSNCFEYEGDWISHPVEIEPNGIELFKCRDDDEASEEDVDISIKGKKKDDGGIFLRLRIADKEGHIRNIYFPFDIEMDTALSVATEMVAELDITDQDVTSIADMIDGEIASLVPEWKPGPGIEEPNHFVNNFFCHNCVSNDASGGSIMDFHSHNQVGKNSQLPQCCRHGCTSMHGRFEEITFPSEYDNHVRGDTVTSIESNQPESQHYQELWNHQESCELSSVESDQSHSDEQYEQLDKSVLAEDKGKGVLENKFAHDPGNPPPSLSGNYLSTISLLCPGSGSEYEIEVQQELRWLKAKLQMESRDLRDKRFGAAAKSSSHSSNKVHKTEQGIVLPLTETVNGVKNGIHLKPLCNFWDYDSSYRSLIQKSHSNLDIQSLQNCEVMCSHKEGIIRATAKSFYTGSLRDTPYRTVSLPVDAVDI 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00931 756 Gene3D Transferase(Phosphotransferase) domain 1 107 298 - -
Vian6g00931 756 FunFam probable serine/threonine-protein kinase WNK9 107 298 - -
Vian6g00931 756 SMART serkin_6 24 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00931 756 Gene3D - 385 451 - -
Vian6g00931 756 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Vian6g00931 756 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vian6g00931 756 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 388 442 IPR024678 GO:0004674|GO:0005524
Vian6g00931 756 Pfam Protein kinase domain 27 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00931 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vian6g00931 756 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 658 - -
Vian6g00931 756 SUPERFAMILY Protein kinase-like (PK-like) 27 294 IPR011009 -
Vian6g00931 756 CDD STKc_WNK 22 293 - -
Vian6g00931 756 ProSiteProfiles Protein kinase domain profile. 24 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00931 Vian-Chr6 26566163 26569201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00931 12 514 MAP Kinase Kinase Kinase AT3G22420 56.261 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vian6g00931 Pkinase 1.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00931 K08867 - gmx:100790554 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00931 6 26566163 26569201 Vian6g00931 6 26566163 26569201 ECH
Vian6g00931 6 26566163 26569201 Vian3g01319 3 14596198 14599174 PCT