Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00928 ATGGCATCTCAACAACACGATGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCCCAGGAGGACGAAGAGTTCGAAGAAGAGGACGACGTTTTGGCCGCAGATGATGAAGAAAACGAGCCCTCTCCCTCTACCGCTCTCGCCGTCACCGTCGCCGTCCCCGGTTCCGCCATCTCAAACGGCGGAGGCGCTCCACTATCCACGCCCACCGCCACCACCATCGTCATCGGTGACTCCTCCGATCCGAAGCGGCGGCGCCTGGAGCCAATCGAGGAAAAGAAGCCTCCGCCTCCGCTAGACGACTCGCGGCGGCTGTTCCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCCTTCAAGGGTTCCTGGACTACACCTCTCAGAGAGGATCCTCTCACCACAACGACACCGCTTTGTTCTACGACCAAATCAAGTCGAAACTGCAACTCGATTTCAACAAGAACCAGCTGGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAATAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCACACGATCAAGCCACCTTCGAAATCTCCCGCAAGATCTGGAGCAGCGTGGCTCCAATCGGCGAAAATTCCTTGGACGACGACGAAATCAACCCTTGCCCCAACCCTAACCCTATCATCCCCCACCCTAACCTTAATTTTAGCCCCGTAATTCTCAAGAACGAAACGACTTCCAGGAATTCCGCGGAGAAGAAAACACCGAAACGCCCCCGGCCTCGATCGGCGGTGAAAGTCGAGCCAATCGATGGATCCGCGTCGAACAGAGATCTTAATTGTACTAGCAATGCTACAACTACGGCTACTCCTACTGCTACCGCTACCAACACTACCCCTACTACTACTAATAACAATTATAACAGTGGTTATAGCAATAACATACCGAGTTTGATTGAGGAGACGGTGAGGAGTTGTCTGTCGCCGGTGGTGAGAGAGTTGGTAGGAGCGATGGGAGGGGGAGCGTTTGGTGGGAGAGGAGTTTCCTTGAATTTAAACCCCACGCCTTTTATGAATTTGAGTTATGGTGGTGGAGAATTGGTGGATGAAAAATGGAGGAAGCAACAGATATTGGAGTTGGAAGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAGGCTGCGATGGAGGAGTTGCGGTCCGGTGGAGGAGGAGTTTGA 1224 0.5351 MASQQHDAVFREEDMDDDDDESQEDEEFEEEDDVLAADDEENEPSPSTALAVTVAVPGSAISNGGGAPLSTPTATTIVIGDSSDPKRRRLEPIEEKKPPPPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSSVAPIGENSLDDDEINPCPNPNPIIPHPNLNFSPVILKNETTSRNSAEKKTPKRPRPRSAVKVEPIDGSASNRDLNCTSNATTTATPTATATNTTPTTTNNNYNSGYSNNIPSLIEETVRSCLSPVVRELVGAMGGGAFGGRGVSLNLNPTPFMNLSYGGGELVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSGGGGV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00928 407 MobiDBLite consensus disorder prediction 12 40 - -
Vian6g00928 407 MobiDBLite consensus disorder prediction 244 307 - -
Vian6g00928 407 MobiDBLite consensus disorder prediction 82 105 - -
Vian6g00928 407 Pfam Protein of unknown function, DUF573 109 203 IPR007592 GO:0006355
Vian6g00928 407 Coils Coil 379 399 - -
Vian6g00928 407 PANTHER BNAANNG10740D PROTEIN-RELATED 4 399 IPR007592 GO:0006355
Vian6g00928 407 MobiDBLite consensus disorder prediction 246 264 - -
Vian6g00928 407 MobiDBLite consensus disorder prediction 64 80 - -
Vian6g00928 407 Coils Coil 157 177 - -
Vian6g00928 407 MobiDBLite consensus disorder prediction 1 105 - -
Vian6g00928 407 MobiDBLite consensus disorder prediction 274 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00928 Vian-Chr6 26544751 26545974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00928 47 402 GeBP Transcription Factor Family AT5G28040 45.974 1.33e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vian6g00928 DUF573 1.6e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00928 - - gmx:100779712 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00928 6 26544751 26545974 Vian3g01326 3 14635976 14637145 PCT