Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00921 ATGTGGTGTCACCTTCTTCCTCTGCCCAAACCAACACGGAGTGGGTCCTGGCAAGTGGTTTTCCCATGGTGCCACGTTTTATGCATGCGCCTTCTCCAGGTTTGTCTTCTTTTCCTGGGCCTCCTCTTTTGGGCTCGGGCTCGGTTGAGAAGAAAGCGGCGAGAGGAGGAGGAGATACATAGGGGTGAGGCAAAGGTCGTGGGGGAAATGGGGGCGGAGATTCGCGATCCTTACAAAGCGGCGATAGTATGGCTTGGCAACTTCGACACTGCCGAGGCTGCTACTAGAGCCTACGATGAGGCCGCATTGAGGTTAGGAGGTAATAGAGCCAAACTCAACTTCCCCGAAAATGTTATCCCGATTCATCCTCCTCACCTTCCCAATTTTCCGGCCACCTCACTCTTGGGCTCCGGTGATGTTCTAGCGGTGACTGGTTATTCTCCGACGGTGATGCAGGGGGCGCCGCTTTAG 471 0.5499 MWCHLLPLPKPTRSGSWQVVFPWCHVLCMRLLQVCLLFLGLLFWARARLRRKRREEEEIHRGEAKVVGEMGAEIRDPYKAAIVWLGNFDTAEAATRAYDEAALRLGGNRAKLNFPENVIPIHPPHLPNFPATSLLGSGDVLAVTGYSPTVMQGAPL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00921 156 PANTHER DNA-BINDING DOMAIN 68 116 IPR044808 GO:0003700|GO:0009873
Vian6g00921 156 CDD AP2 68 117 IPR001471 GO:0003700|GO:0006355
Vian6g00921 156 SMART rav1_2 59 121 IPR001471 GO:0003700|GO:0006355
Vian6g00921 156 SUPERFAMILY DNA-binding domain 70 117 IPR016177 GO:0003677
Vian6g00921 156 ProSiteProfiles AP2/ERF domain profile. 48 115 IPR001471 GO:0003700|GO:0006355
Vian6g00921 156 Gene3D AP2/ERF domain 46 117 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00921 Vian-Chr6 26484007 26484556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00921 68 123 AP2-EREBP Transcription Factor Family AT5G64750 71.429 6.20e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00921 - - vum:124834474 130.568