Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00918 ATGGCCTCATCATCATCTTCTTCTTCTCTGAACTTTACAGTGCGAAGGTGCCAACCCCAGCTGGTGCCTCCTGCTATCCCCACTCCTCATGAATTTAAACCACTTTCCGACATTGATGATCAAGAAGCCCTGCGTGTCCACATTCCGATGATACACATTTATAAAAAGCAAGCATCAATGGCAGAGAAAGACCCAGTTCAAGTCATTCGCCAAGCACTCTCCCAGACACTTGTCTTTTATTACCCATTTGCGGGTAGGCTTAGAGAGGGGCCTAACCGCAAATTGATGGTGGATTGCACTGGAGAAGGTGCCATGTTCATTGAGGCCGACGCAGACGTCACACTTGATCAGTTTGGCGATTTTCTCCAGCCTCCATTCCCATGCTTCCATGAACTGCTATACGATGTCCCTGGCACACAACAAATTACCAACACTCCCCTTCTACTTGTACAGGTGACACGGCTCAAGTGTGGTGGTTTCATCTTAGCCATCGGCCTCAACCACACCATGTGCGATGGACCCGGTTACGAACAATTCATGAGCGCGTGGGCGGAAATGGCTAGAGGTGCAACCAAACCTTCCATTGCACCAGTGTGGCGTAGGGAGCTCCTAATGGCAAGAGACCCACCTCGCATTACATGCAACCATCATGAATTCGAGCAAGTCCAAGATACCCTTCCATCTTCCAACCAAAACATGGTTCAACGATCATTCTTCTTTGGACCACTCGATATAGCTGCACTTCGGCGCTTGATTCCCCAACACCTTCAACACTGCACCACATTTGATCTCATCACAGCATGCCTCTGGCGCTGTCGCACAAAAGCACTGCAAATAGAAGCAGACGAGGATGTTCGCATGATGTGCATAGTCAACGCACGTGGTCGGTTCAATCCTCCACTTCCTGTTGGTTACTACGGCAACTGTTTTGCATATCCGGCGGCAGTAACGACTGCAGGGAAGCTTTGCAGAAACCCATTTGGGTATGCGGTGGAGTTGATAAATAAAGTGAAAGGTGAGATGACAGAAGAGTACCTGCAATCTGTTGCAGACCTGATGGTGATGAAAGGACGATGCTTATTCACAACTGTGAGGTCTTATATTGTGTCACATTTAGCACGTTTTAACCTTAGAGAAGTGGATTTTGGTTGGGGTGAGGCTGTGTACGGTGGAGTGGCCCAAGCTGGGGTTGGAAGCTTCTTAGGAGTTTCGTATTTCTGTTCTGCTAAGAATGGAAAAGGAGAAGAAGGCATAATATTTCCGATTTGCTTACCTGCTGAAGCTATGGAGAGGTTTGCTGAAGAGTTTAACCACATGCTATGCAACAAAAGCCAACCTCAAACCAGTTCTGCTACTTTTATAATGTCTACCCTCTAA 1377 0.4757 MASSSSSSSLNFTVRRCQPQLVPPAIPTPHEFKPLSDIDDQEALRVHIPMIHIYKKQASMAEKDPVQVIRQALSQTLVFYYPFAGRLREGPNRKLMVDCTGEGAMFIEADADVTLDQFGDFLQPPFPCFHELLYDVPGTQQITNTPLLLVQVTRLKCGGFILAIGLNHTMCDGPGYEQFMSAWAEMARGATKPSIAPVWRRELLMARDPPRITCNHHEFEQVQDTLPSSNQNMVQRSFFFGPLDIAALRRLIPQHLQHCTTFDLITACLWRCRTKALQIEADEDVRMMCIVNARGRFNPPLPVGYYGNCFAYPAAVTTAGKLCRNPFGYAVELINKVKGEMTEEYLQSVADLMVMKGRCLFTTVRSYIVSHLARFNLREVDFGWGEAVYGGVAQAGVGSFLGVSYFCSAKNGKGEEGIIFPICLPAEAMERFAEEFNHMLCNKSQPQTSSATFIMSTL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00918 458 Gene3D - 217 437 IPR023213 -
Vian6g00918 458 Gene3D - 8 216 IPR023213 -
Vian6g00918 458 FunFam Spermidine hydroxycinnamoyl transferase 12 219 - -
Vian6g00918 458 PANTHER ACYL TRANSFERASE 4 12 439 - -
Vian6g00918 458 Pfam Transferase family 17 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00918 Vian-Chr6 26432026 26433867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00918 45 436 Monolignol Biosynthesis Gene Families AT5G48930 29.975 1.36e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00918 K19861 - pvu:PHAVU_006G098400g 755.747