Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00908 ATGGGGTGTGTGATTAGCAGGGAGGTGTCGAAGGGGATAATCTCTGAGTTGAAGGAGGAGAAGGGTTTGAGTGGTGAGAGTAAGAGGAAGGTTGATGGAGTGTCGGGGAGCAAGAGTGAGGTTGTGGTAGAGGTTCAGAATGGCGAGGAGAAGGAGAAGGAGAAGGGTGGTGGTGAAGGGGTGCAACGGCCTCGAGGCGAAAGGAGGAGATCGAAGGCGAATCCGAGGCTGAGCAATCTGCCCAAACATTTGCGGGGGGAGCAGGTTGCTGCTGGATGGCCGCCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCAGTGGCTGGATTCCGCGAAAGGCAGACACCTTTGAGAAAATCGATAAGATTGGACAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACAATGACTGGTAAAATTGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTAGAACCTGAGAGTGTAAAATTCATGGCGAGAGAGATTCTTATTTTGCGAAGGTTGGACCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGATCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGATTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAGCCGTCATGTACTTCACCGTGATATTAAAGGGTCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATTGCCGACTTTGGATTGGCTTCTATTTTTGATCCAAACCATAAGCATCCAATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAGCTGCTCCTTGGTGCCACAGATTATAGTGTGGGTGTAGACCTCTGGAGTGCTGGATGTATTTTAGGAGAATTATTGGCTGGGAAACCAATCATGCCTGGTCGTACAGAGGTGGAACAACTGCACAAGATATACAAACTATGTGGTTCACCTTCAGATGAGTTTTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCGCGAGATCCATACAAGAGGCGCATAAGAGAGATTTTTAAAGATTTTCCACCTTCTGCTCTACCCCTCATTGATACACTTCTCTCAATTGATCCTGTAGAACGGGAAACTGCCTCAGATGCTTTGAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGAAGGGATGATGAAATGAGGAGACTAAGAGCTGCTGGCAAAGCTCAGGCTGATGGCCCCAAGAAGCATCGTACTCGTGATCGTGGAACAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCGAATATTGATAGAAGAAGGCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGTTTTCCTTTGGGTTCTTCCCATCATATTGATCCGGATACTGTTCCAACTGATGTCACTTTCACATCAACCTCTTATACCTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGCAATGCTGCTGACAATGGAGTACCAAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCACAGAAAGATTCTCTTAAGGACAAGATTAAAGGAAAGAAAATCATAGCTTAG 1737 0.4508 MGCVISREVSKGIISELKEEKGLSGESKRKVDGVSGSKSEVVVEVQNGEEKEKEKGGGEGVQRPRGERRRSKANPRLSNLPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMDHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHSRHVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEFWKKSKLPNATLFKPRDPYKRRIREIFKDFPPSALPLIDTLLSIDPVERETASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRLRAAGKAQADGPKKHRTRDRGTKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPTDVTFTSTSYTYSKEPFQAWSGPIGNAADNGVPKRKKHTAGDALDLSKPQKDSLKDKIKGKKIIA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00908 578 SMART serkin_6 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00908 578 CDD STKc_CDK9_like 116 400 - -
Vian6g00908 578 Gene3D Phosphorylase Kinase; domain 1 103 198 - -
Vian6g00908 578 MobiDBLite consensus disorder prediction 418 455 - -
Vian6g00908 578 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Vian6g00908 578 SUPERFAMILY Protein kinase-like (PK-like) 111 407 IPR011009 -
Vian6g00908 578 Pfam Protein kinase domain 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00908 578 ProSiteProfiles Protein kinase domain profile. 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00908 578 MobiDBLite consensus disorder prediction 17 35 - -
Vian6g00908 578 MobiDBLite consensus disorder prediction 544 578 - -
Vian6g00908 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vian6g00908 578 PANTHER CELL DIVISION PROTEIN KINASE 114 404 - -
Vian6g00908 578 MobiDBLite consensus disorder prediction 17 83 - -
Vian6g00908 578 Gene3D Transferase(Phosphotransferase) domain 1 199 440 - -
Vian6g00908 578 MobiDBLite consensus disorder prediction 529 578 - -
Vian6g00908 578 FunFam probable serine/threonine-protein kinase At1g54610 103 198 - -
Vian6g00908 578 MobiDBLite consensus disorder prediction 44 74 - -
Vian6g00908 578 FunFam probable serine/threonine-protein kinase At1g54610 199 440 - -
Vian6g00908 578 MobiDBLite consensus disorder prediction 407 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00908 Vian-Chr6 26294824 26298573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00908 108 440 Core Cell Cycle Gene Families AT5G10270 53.009 8.87e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vian6g00908 Pkinase 2.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00908 K08819 - gmx:100786837 1055.05