Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00898 ATGGAGTGCAACAAGGATGAAGCTGTGAGGGCTAAGCAGATTGCTGAAAATAAGATGCAAGCTGGTGACTATGAAGGGGGGCTAAAATTTGCTTCAAAAGCCCAAAGGCTGTTTCCTGATATTCAAAACATTGTTCAGATCCTTGCAGTTTGTGAGGTCCACTGTGCTGCTCAGAAGAAACACTCTGGGTCTGACATGGACTGGTATGGAATTCTCCAGACTCAACAATCTGCCGATGAAGCAACCATTAAGAAACAGTATAGAAAGCTTGCACTGCTACTTCATCCTGATAAAAATAAATCTGCTGGTGCAGAGGCTGCTTTCAAGTTGGTTGGTGAAGCTAACAGAGTGTTAAGCGATCCATCGAAGCGTACTCTGTATGACTCAAAATTTGGAGTTTCAGTGGGAAATACAGAAGCTAAGGTCGCCCCTTGTCACCCAAATGGAAATGCAAGGAATTATCAGAACATTTTTAATTCACAGCCCCAGGCTTGGAATTCATATCATCAGTTTGAAAGTTCGACATTTTGGACATGTTGTTGTCATTGTAATATTAGATATCAATACTACAAAACTATTTTAAATCAGACCATACGCTGTCAACACTGTTCTAAATCCTTTACAGCTCATGATATGGGGAACCACAATGTGGCACCAACATATTGGCCACCTTTCAATAATCACCAAGGGTCTGCAAAACATGCATCGTCTAAAGAAGCATCAAAAGGCAATGGTGGAAAATCTCGTGGTAGAGAAGAAGAGGGTGTGTCCATGTCAAAATGTGGTGCAGGAGTTGGTGCCTATTCTAAAGTTGCAAATGGCAGAAATGGCCATGTGGCTGCAGGAGTGACAAAGGCTGATGTTAAAGTGTCCAAAGCCAAGGAATCGCAAGCCTCAACGAAAGTTGGTTGTAAAAGAGCAAGGCAGTCAGCATCATATGATAATAACAAAGCTGGAGATGGTAAAGGCATGAAAGACACCAAGGATCAAGAAAATACGGTTGATCCTTCTAGGGAAACTTCAAGGAAAAAACAGCATGTTCTGTACCCAAAAACTGATAAAGCTGGTGATTTTGGAAGTTCATCCAAAAGTACACAAAATCATGAATCATCTACCACCCCTAGAGTAGAGAAAAAAGAAGTGTCAGCAACTGCTGATGGTGATCAGAATGGGGAGACAAGAAATAAAGCAGGTGCACTACATGAAGAAACAATTTTAAGGAATAGAGCCAAAGTTGAGCAGACTAATGTGCAAGGAAAGGAGGTATTGAACTCAGATTTCAATGATAGAAAGTCTAAAGCTGTCTATTGTTCTCCATCGAATTCAAATTTATCTCCCAATTCAGAGATTGTCTGTCCTGATACAGATTTCAGTGATTTTGAGAGAGATAAGGCAGAGGATTGTTTTGCTGTTAATCAATTATGGGCTATTTTTGACAATAATGATGGTATGCCACGATTCTATGCTCTTGTGAAGAAAGTCTACTCCCCTTTCACGTTGCGGATTACTTGGCTAGAAGCTGACTCAGATGACCAAGGTGAGATTGACTGGCATAAAGCCGGTTTGCCTATTGCTTGTGGTAAGTTCAGACTTGGTCATTCTCAGATTACTTCAGATCGTTTTATGTTCTCTCATCAGATGCATTGCATAAAAGGAAGTAGGACTACATATCTGATATACCCAAAGAAGGGAGAAACTTGGGCAATTTTCAGACACTGGGATCTTGGATGGAGTTCAAATCCAGAAAAGCATTTTGAGTATGAATTTGAATATGTGGAAGTTCTATCAGATTTTGACGAAAATTTAGGCATTGAAGTTGCTTATCTTGGCAAACTGACAGGGTTTGTTAGTCTCTTTCAACATTCTGCATTGGATGGTATTAGCTTATTTTGTGTATCACCTCGTGAGATGTACAAGTTCTCTCATCGGATTCCTTCTTACAAGATGACAGGTGCTGAAAGGAAAGGTGTTCCAAGTGGATCTTTTGAACTTGATCCTGCTGGTCTGCCTACTTGTCTTTTTGAAGTTGGTGATACTGGTGTTGCGAAAGTGGATGGAGTCAATTGTTCCCACCAGGAGTATGCAAACTCTAAAGTTGAACAGGCAACTTCTAATGATAGTATTCACAAATCAAAGTTGCAAGAGAGTATTGATGCCGAAAGAACAGCACAAATTCTCAGAAGGTCTCCAAGGTCGAGCCAAAAAAGTATGGACAATGGCCAAGCAAGCACTGTTCAATTCACGGTCAGAAAGGATGACATAAACATTGACCACAGGGACTACAGTCCCCCAGAAGGAAGCGCTGCTTCGTCCCATACTAATGAAAGGAAGGTCAAGAAACCTCAGAAACACAAGAAAAATAGTTATGATGGAGAGACATTGAATAAGTTGCATAAAGATAAAGATCTAAGCAAGAAAAATGTTCTAGGAGATGCATCTGAAATGACATGTAAGTTGACTGTTAATCATTCAAAAAACAGCAATAATGTGAAGAGTAGCAACACTCCTCAGTTTGGAGAATCATGTTACGACTTTAAGAAGGAAAAATCTGAAAAGACGTTTCAGTGTGGACAGATATGGGCAATATATTGTGATAGGGATTATATGCCCAATACTTACGCACAAATTAAGAAGATTGAATTCACTCCTAATTTTAGATTGCAGGTTTCCGTGCTTGAACCGTGCTCACCGTCAGGTGACCTTAAAAGAACAATATCTTGTGGCACCTTCGAAGTTAAAAAAGGCAAATTACAGATTCTCTCTCCCTCTGCATTCTCTCATCAGTTAAAAGTTGAACCTTTGGTAAATAATAGATATGAAATTTACCCTAGAAAAGGTGAGGTTTGGGCTCTTTACGGGGACCAGAACTATGAGCTGACTTCTTCAAAGCAGGGCAAAGGTAAATGTGATATAGTAGAAGTATTAGCAGATAGTGACAAGACTATACAGGTTGTTGTTCTGACGCCACATAGCAACTCCAAGACAATTTTCAGAGCTCCTAGAATTCAGAGATCTAAAACTGGTGTAATTGAAATATTAAGAGAAGAGGTTGGCAGATTTTCACATCAGATTCCTGCTTTTCAGCACTGGGACAATGTGATTCTCAGAGGGTGTTGGGAGCTTGATCCTTCTTCAGTTCCTGGTTCTTTCGTACCAATAAACTGA 3165 0.4009 MECNKDEAVRAKQIAENKMQAGDYEGGLKFASKAQRLFPDIQNIVQILAVCEVHCAAQKKHSGSDMDWYGILQTQQSADEATIKKQYRKLALLLHPDKNKSAGAEAAFKLVGEANRVLSDPSKRTLYDSKFGVSVGNTEAKVAPCHPNGNARNYQNIFNSQPQAWNSYHQFESSTFWTCCCHCNIRYQYYKTILNQTIRCQHCSKSFTAHDMGNHNVAPTYWPPFNNHQGSAKHASSKEASKGNGGKSRGREEEGVSMSKCGAGVGAYSKVANGRNGHVAAGVTKADVKVSKAKESQASTKVGCKRARQSASYDNNKAGDGKGMKDTKDQENTVDPSRETSRKKQHVLYPKTDKAGDFGSSSKSTQNHESSTTPRVEKKEVSATADGDQNGETRNKAGALHEETILRNRAKVEQTNVQGKEVLNSDFNDRKSKAVYCSPSNSNLSPNSEIVCPDTDFSDFERDKAEDCFAVNQLWAIFDNNDGMPRFYALVKKVYSPFTLRITWLEADSDDQGEIDWHKAGLPIACGKFRLGHSQITSDRFMFSHQMHCIKGSRTTYLIYPKKGETWAIFRHWDLGWSSNPEKHFEYEFEYVEVLSDFDENLGIEVAYLGKLTGFVSLFQHSALDGISLFCVSPREMYKFSHRIPSYKMTGAERKGVPSGSFELDPAGLPTCLFEVGDTGVAKVDGVNCSHQEYANSKVEQATSNDSIHKSKLQESIDAERTAQILRRSPRSSQKSMDNGQASTVQFTVRKDDINIDHRDYSPPEGSAASSHTNERKVKKPQKHKKNSYDGETLNKLHKDKDLSKKNVLGDASEMTCKLTVNHSKNSNNVKSSNTPQFGESCYDFKKEKSEKTFQCGQIWAIYCDRDYMPNTYAQIKKIEFTPNFRLQVSVLEPCSPSGDLKRTISCGTFEVKKGKLQILSPSAFSHQLKVEPLVNNRYEIYPRKGEVWALYGDQNYELTSSKQGKGKCDIVEVLADSDKTIQVVVLTPHSNSKTIFRAPRIQRSKTGVIEILREEVGRFSHQIPAFQHWDNVILRGCWELDPSSVPGSFVPIN 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00898 1054 SUPERFAMILY Chaperone J-domain 64 130 IPR036869 -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 699 805 - -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 726 750 - -
Vian6g00898 1054 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 1047 - -
Vian6g00898 1054 SMART dnaj_3 66 123 IPR001623 -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 286 399 - -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 221 257 - -
Vian6g00898 1054 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vian6g00898 1054 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vian6g00898 1054 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vian6g00898 1054 Pfam DnaJ domain 67 128 IPR001623 -
Vian6g00898 1054 CDD DnaJ 67 120 IPR001623 -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 711 725 - -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 357 371 - -
Vian6g00898 1054 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 221 243 - -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 319 351 - -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 785 805 - -
Vian6g00898 1054 Pfam Domain of unknown function (DUF3444) 838 1029 IPR024593 -
Vian6g00898 1054 Pfam Domain of unknown function (DUF3444) 448 653 IPR024593 -
Vian6g00898 1054 MobiDBLite consensus disorder prediction 295 316 - -
Vian6g00898 1054 Gene3D DnaJ domain 52 143 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00898 Vian-Chr6 26172036 26175200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00898 4 212 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.112 1.83e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00898 - - var:108342824 2136.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00898 6 26172036 26175200 Vian6g00898 6 26172036 26175200 ECH