Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00891 ATGGTCCCAATTGGTCATGCTTCCGATGACAAGCAGAAAAAACGAGGCATAGTGTTTTCTAACCCTGCTTCTGCCCAATGCTTTGTGATTTTAATATACTGTGTTTCCTTTTCACATTGTTTAGTTTCTCCTCCACCAACTTTTCCCTGTGATGAAAATGCTGATTTTTATTTTTCTCTTGCAGACTCAGGAGAAATCGTTTTGGAGGAGAAAAGTGTGGTAACTCTAAGAGAACTCTTGGAAGAAGGCATTAGTGACACTGAGAAATCTTATCAACCACCTGAATTAGCTGGTGGTAATCCAAGCTCAACGACTGAGTTTCACCGGAGGAAGTTACTCAGACCATGCAGAATGAGATCAATTGAGCGCCTACCATCTTTTCCTCCAAGTTGTTTGTCAAAACTAACAAAGCCTAAAAGCAAAGGCATTGGGAAAAACACTATTCGATGTAATCCACACAGTTCCAGAACTTTGGTGAATTTCAGTCTTTCTGACCTGAGAAATGCAACCAACAATTTTAGCAATGAGAATATAATTGGAAGAGGTGGCTATGCTTATGTTTACAAGGGCAGCCTGCAAGATGGGCAACTAATAGCAGTTAAGCAACTGAGTAGAGGGACTCCAGAAGACAGGATATCAGTTCTTCTATCTGAGCTAGGAATTCTTTCTCATGTTGAACACCCCAATACTGCCATGCTTATTGGGTTTGGAGTTGAAGGGGGAATGTACCTTGTTTTTCAATTATCTCCTATGGGAAATTTAGGATCTCTTCTTCATGGTGCAAAGCCTTTATTGGAAGCTAATAATATTAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGACTGGGAACAAATGGAACGTGTAGTTTTGACTGCATCACTGTGTGTTGAGCAGTTTCCTATCTTACGCCCCAGAATGAGTCAGATTGCAATACTGCTAAGAGGTGATGACTATGTCATGGAACATACTGAGAGGAGAATACTCCCCTCTGGTTCTGGCTTGAAATCTTTGGCCCCGCTGCTCCCAAACAAATATGGGGTCCAGGTTCAGCAAATGCAAAGGAAGTTAGGGTTGGGGATGTGTTTCAAGGAAAGAGCAGATTTTGAATCTGGGTTTTTGTTGGATGGTGGAGAATATGGATATAAAAAAGGGTCTCTGATTCCGCTTTTGGTGACGGCCACTGTTAGGTTTGGTCTTGGTGAAACCACTGCTTCTGCAGTTGCCAATGCACCTGCTGGCTTGGATGAAAATGGAGACTGA 1266 0.421 MVPIGHASDDKQKKRGIVFSNPASAQCFVILIYCVSFSHCLVSPPPTFPCDENADFYFSLADSGEIVLEEKSVVTLRELLEEGISDTEKSYQPPELAGGNPSSTTEFHRRKLLRPCRMRSIERLPSFPPSCLSKLTKPKSKGIGKNTIRCNPHSSRTLVNFSLSDLRNATNNFSNENIIGRGGYAYVYKGSLQDGQLIAVKQLSRGTPEDRISVLLSELGILSHVEHPNTAMLIGFGVEGGMYLVFQLSPMGNLGSLLHGAKPLLEANNIKDLVDPSLGDDYDWEQMERVVLTASLCVEQFPILRPRMSQIAILLRGDDYVMEHTERRILPSGSGLKSLAPLLPNKYGVQVQQMQRKLGLGMCFKERADFESGFLLDGGEYGYKKGSLIPLLVTATVRFGLGETTASAVANAPAGLDENGD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00891 421 Gene3D Phosphorylase Kinase; domain 1 136 244 - -
Vian6g00891 421 Gene3D Transferase(Phosphotransferase) domain 1 245 327 - -
Vian6g00891 421 PANTHER OS08G0249100 PROTEIN 256 324 IPR046958 -
Vian6g00891 421 ProSitePatterns Protein kinases ATP-binding region signature. 179 201 IPR017441 GO:0005524
Vian6g00891 421 SUPERFAMILY Protein kinase-like (PK-like) 161 266 IPR011009 -
Vian6g00891 421 SMART tyrkin_6 173 315 IPR020635 GO:0004713|GO:0006468
Vian6g00891 421 ProSiteProfiles Protein kinase domain profile. 173 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00891 421 Pfam Protein tyrosine and serine/threonine kinase 176 266 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00891 Vian-Chr6 26100781 26105579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00891 257 321 Receptor kinase-like Gene Family AT1G53420 35.385 3.28e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian6g00891 PK_Tyr_Ser-Thr 1.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00891 - - gmx:113001177 268.47