Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00871 ATGTGTTTATCTGAGGGAGAGAGAGGCATGGCTCTAGAAGCAGTAGTGTATCCCCAACCCCAGGACCCGTTTGGCTGTGCAATCAAAGACCTATACAGCTACAACAACTTGTTAGAAGCTGCTGCAGCCAACTTGGGTTATGGAGATTTCACCCTTGAAAAAGAAGACCAAGCTTCTGTCACTTTTCTTGACAACCAAACAGAGAATTACTCCTATGGAGAATGGAACTCTTCTCCTCCCTCTTTGTTGCCTCACACCATCAATGCATCAAATCCTCCTTCTTCAGAAACCAGCAACACGCAGAACAACTTAGATACTTCAGTTTCTACCCCAGCTCGCCCCAAACGCCGCAGAACCAAAAGCAGGAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACCCACATTGCTGTAGAACGCAACAGAAGGAAGCAGATGAACGAGTACCTCTCTGTTCTTCGCGCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATAAACTTTGTGAAGGAGCTTGAGCAGAGGCTGCAATTTCTCGGTGCTCAGAAAGAGAAAGAGGGGAAACCTGAGGTACCCTTTTCTGAGTTTTTCTCATTTCCTCAGTACTCAACAAGTCCCAGTGGTGGCTGTGATAACTCTGCAGCCATGAGTGACCAAAAGGGCGAGGTTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGACCAAAGCAGCTCTTGAAAATAGTATCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAACGTTACCACAACCGAGGAAATTGTCCTCTATTCTCTCAACGTCAAGGTTTGTGCTACCTAA 897 0.456 MCLSEGERGMALEAVVYPQPQDPFGCAIKDLYSYNNLLEAAAANLGYGDFTLEKEDQASVTFLDNQTENYSYGEWNSSPPSLLPHTINASNPPSSETSNTQNNLDTSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRALMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKPEVPFSEFFSFPQYSTSPSGGCDNSAAMSDQKGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTEEIVLYSLNVKVCAT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00871 298 SMART finulus 136 187 IPR011598 GO:0046983
Vian6g00871 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Vian6g00871 298 MobiDBLite consensus disorder prediction 71 128 - -
Vian6g00871 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 195 IPR036638 GO:0046983
Vian6g00871 298 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
Vian6g00871 298 MobiDBLite consensus disorder prediction 71 110 - -
Vian6g00871 298 PANTHER MAX DIMERIZATION, MAD 37 296 - -
Vian6g00871 298 Gene3D - 115 196 IPR036638 GO:0046983
Vian6g00871 298 CDD bHLH_AtFAMA_like 133 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00871 Vian-Chr6 25885910 25886951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00871 10 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.799 5.32e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian6g00871 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00871 - - gmx:100777413 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00871 6 25885910 25886951 Vian6g00871 6 25885910 25886951 ECH
Vian6g00871 6 25885910 25886951 Vian3g01361 3 15004668 15005914 PCT