Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00870 ATGATGAAACACCGCCATCACGCAACCCAATTCCTCCTCCTCCTCCTCCAGGTGGTGGTGGCGGCGTCAATTCCAATCGCCGTCGCGCAGTCCCAGCCCTCGCCCAATGAAAACACCGACCCAAGACTAAACACCTTCAACCCCTCTCTAGCCGCAATAATCGTCATATTAGTGGCGGCGCTTTTCGTCATGGCCGTTTTCTCCATCTACGTACGCCACTGCGCCGATACGCCTTCCAACAGCGTTAGGCCTCTCACGTCCGCACGCTCCAGAAGAGCTGCGCGTGGCCTTGATCCCGCCGTCATCCAAACCTTCCCCACCCTCGAATACTCCGAGGTCAAGATCCACAAGATCGGAAAAGAACCCTTGGAATGCGCGGTGTGTTTGTGCGAGTTTGAAGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTGTTCCACCCCGAGTGCATAGACGAGTGGTTGAGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAACCTCGTACCGACAGAATCACAGGAATCTGACGCCAACAACGGTGTTGCTGCTGTTCCCGATCCCCAAATCTTAACGCCGGACCTTGAAGCGCAAAACGACGCCGTAGAAGCCACGCCAGAGCAGCAAAACACGGACTCTGACCGTTTCTTGAACGAACCGAAAGTTCTTTCTCTGGAGAAAACGCTGAACCGGAACCGCACACGTGGATCTCGGTCGAACCGGCCGTGCCGGTTCTCGAAGTCGCACTCGACTGGGCACTCGATCGTCCAACCGGGAGAAAATACGGACCGGTTCACTCTGGTACTTCCTTTGGAGGTTCGCAAGCAACTAATAAACCGGCAATTGCATCGTGCAAGTAGCTTGATCGTGTTACCGAGGGAAGGTAGTTCGAGGCGGGGTTACCGAATCGGAGGAGAAGGGAGTAGTCGGGGGAAACATTCGAGGCGGTTGGACCGGAGTTTGAAATCGGACCGATGGATTTTTTCGGTAGCTGCGCCGTTTTTCGCTAGGGCACTGTCTATTAGGTCCCCCAGGGTGCGGAACAACGATGTTGAAAGAATGTCATCGTCATCCACCGCGCCGATTATGCCGCCGACGGCCGTTGACTCGGCTCGGCCACCGGTTTAA 1134 0.5626 MMKHRHHATQFLLLLLQVVVAASIPIAVAQSQPSPNENTDPRLNTFNPSLAAIIVILVAALFVMAVFSIYVRHCADTPSNSVRPLTSARSRRAARGLDPAVIQTFPTLEYSEVKIHKIGKEPLECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPTESQESDANNGVAAVPDPQILTPDLEAQNDAVEATPEQQNTDSDRFLNEPKVLSLEKTLNRNRTRGSRSNRPCRFSKSHSTGHSIVQPGENTDRFTLVLPLEVRKQLINRQLHRASSLIVLPREGSSRRGYRIGGEGSSRGKHSRRLDRSLKSDRWIFSVAAPFFARALSIRSPRVRNNDVERMSSSSTAPIMPPTAVDSARPPV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00870 377 CDD RING-H2_EL5-like 124 167 - -
Vian6g00870 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 252 - -
Vian6g00870 377 SUPERFAMILY RING/U-box 118 173 - -
Vian6g00870 377 SMART ring_2 125 166 IPR001841 -
Vian6g00870 377 FunFam E3 ubiquitin-protein ligase ATL6 85 173 - -
Vian6g00870 377 MobiDBLite consensus disorder prediction 233 260 - -
Vian6g00870 377 MobiDBLite consensus disorder prediction 352 377 - -
Vian6g00870 377 MobiDBLite consensus disorder prediction 245 260 - -
Vian6g00870 377 MobiDBLite consensus disorder prediction 352 366 - -
Vian6g00870 377 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Vian6g00870 377 Pfam Ring finger domain 124 167 IPR001841 -
Vian6g00870 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00870 Vian-Chr6 25860780 25861913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00870 1 362 Rapid Response to Elicitors AT3G05200 41.363 1.28e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00870 K10664 - gmx:100781706 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00870 6 25860780 25861913 Vian6g00870 6 25860780 25861913 ECH
Vian6g00870 6 25860780 25861913 Vian3g01362 3 15031203 15032315 PCT