Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00860 ATGGATCATCAAGGGCATGGCCAGAACCCATCTATGGGGGTTGTTGGTAGTGGAGCTCAATTAACATATGGTTCTAACCCATATCAGCAAGGCCAAATAACTGGGCCACCAGGGTCGGTTGTGGCATCAGTTGGGACCATTCAGTCTACTGGTCAACCTGCTGGAGCACAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAACATCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAATCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATTTCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAAAAAAATGACATTGCTGCAGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTACCCCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGAACAATGCCTGTTGGAGGGCCCGCTGATGCACTTCCATACTGCTACATGCCTCCTCAGCATGCTCCTCAAGTTGGAACCGGTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCCCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCCCAGCCTCCAGACCATCGTCAGCCATCCCCAGAACATTAG 783 0.4687 MDHQGHGQNPSMGVVGSGAQLTYGSNPYQQGQITGPPGSVVASVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALPYCYMPPQHAPQVGTGGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDHRQPSPEH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00860 260 SUPERFAMILY Histone-fold 73 173 IPR009072 GO:0046982
Vian6g00860 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Vian6g00860 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Vian6g00860 260 Pfam Core histone H2A/H2B/H3/H4 69 164 IPR007125 GO:0003677
Vian6g00860 260 MobiDBLite consensus disorder prediction 1 20 - -
Vian6g00860 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00860 Vian-Chr6 25764513 25765295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00860 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.290 7.39e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vian6g00860 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00860 K08066 - gmx:100527803 461.455