LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian6g00850	ATGGCAAAGTTAGCTAAGGAGGGTACAACAGTTCGACGTGTTCTAGAGTCCTTGTTCCGCTATTTTGATAGTGCCAATCTGTGGTCTCCAGAACATGGGCTTGCTCTTTCTGTTCTGCTTAACATGCAGTCTATAATTGAAAATTCTGGACAGAATACACATTTGTTACTGTCCATTTTAGTCAAGCACCTCGATCACAAGAATGTCTTAAAAAATCCTAATATGCAACTTGACATAGTTGGGATTGCAGATGCAGGTCCTGTTCTTGATACCATGGCCGTGTTGTTGGAAAACATGTCTAATATTACTGTTATGGCCAGAACCTTGATTGCTGCAGTCTATAGAACTGCTCAAATAGTTGCTTCAATACCAAATATATCATATCAGAACAAGGCAAGATTATTACTTCTGGCAATGGTCCATGCAGACCATGAAACCAGGGTGGGTGCACACCGTGTATTTTCTGTTGTTCTCGTGCCATCTTCAGTTTGTCCTCAACCCTCTCAAGAGTTCGCTTCCGTAAAGTCTGCTGACATTCAAAGAATGCTCTCAAGAAATGTCTCTGTGTTTTCTTCTTCAGCTGCACTCTTTGAGAAATTGGAGAGGAAGCAAAGTTCATTGCCAGAAGATAGTAATGCAGATGCAAAGTTCTGTGGTTGCCGACGCAACGTCTATCGCACACACGCATCGCTCTTCACTCTCTCACTCTCACGGAGAGCGCCAGAAAGATCGCAAATGCAAGACATTTTCGGATCAGTTCGCAGATCACTGGTATTCCGCGGTTCGCCGGAGAGCGATGAGACCTCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATACGAACTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCTTCGCCGTCTATTCCTGAGGACGCTGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTAGAAGAAGAAGTTAAATTACTTAAAGACCTTTCTCATCCAAACATTGTTAGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCTTGGAGTTTGTTCCAGGTGGATCCATATCATCGCTGTTGGGGAAGTTTGGGGCTTTCCCTGAGGCTGTAATAAGAACCTACACGAAGCAGCTACTACTTGGACTTGAATACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTGGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGGGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACCGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACCGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGTTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTTTCTGCTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGGTCTTGAGGTCATCAGCATCAGAACTGCTGCAGGTGATTCTTCAAGCATCTCTTTTAGACTGCGCATCTGAAGTCCTTTGCTCTTCAACAGTAAATCCTCTGGACTCGGGAAATAAACAATTGTGGGGAATGAGCAATGATGATGATGATATGTGTGTGATTGACGACAAAGAAGAGTTCTCGCATAATGATGTTAAATACAAATCACTGATGTCAACTGATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTTCAGAACTGGAAAATCGAGAGGTCAATTTTGTCACAGATGAAAATTACATGCCACCTGATCAGTCAGGGGATGATAAGGGGCAGCCAGATTTTTCCTTTCCAGGTGTCCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATCAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAGCTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGTTGACAGGACAAGTGATGATACTGCTTCTCGAAATTTTTTGAAATTACCTCCTAAAAGCAGGTCACCTAATCGAGTACCAATCAGCACACCATCTAAAGCCATCGATAATACTGGAAGTCCTGGAAGTAATGGCCAGTCCTCATCTACTGTTGGCCATGTAAATAACCATACTTCTCAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGAGTGATAGTTGACTCTCAGCAGCAGCCTAGTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAATGGAAAGAAGAGCTTGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGGGAGCGAACAAGATTTGCTTCTCCCAGCAAATAA	2643	0.4461	MAKLAKEGTTVRRVLESLFRYFDSANLWSPEHGLALSVLLNMQSIIENSGQNTHLLLSILVKHLDHKNVLKNPNMQLDIVGIADAGPVLDTMAVLLENMSNITVMARTLIAAVYRTAQIVASIPNISYQNKARLLLLAMVHADHETRVGAHRVFSVVLVPSSVCPQPSQEFASVKSADIQRMLSRNVSVFSSSAALFEKLERKQSSLPEDSNADAKFCGCRRNVYRTHASLFTLSLSRRAPERSQMQDIFGSVRRSLVFRGSPESDETSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSPSIPEDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAVLFHIGTTKSHPPIPDHLSAAAKDFLLKCLQKEPVLRSSASELLQVILQASLLDCASEVLCSSTVNPLDSGNKQLWGMSNDDDDMCVIDDKEEFSHNDVKYKSLMSTDIESFNPMSDPSDDWGCKFDASSELENREVNFVTDENYMPPDQSGDDKGQPDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVDRTSDDTASRNFLKLPPKSRSPNRVPISTPSKAIDNTGSPGSNGQSSSTVGHVNNHTSQDIPASPLNEWKGVIVDSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK	880

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian6g00850	880	MobiDBLite	consensus disorder prediction	811	828	-	-
	Vian6g00850	880	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	436	448	IPR008271	GO:0004672\|GO:0006468
	Vian6g00850	880	ProSiteProfiles	Protein kinase domain profile.	312	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g00850	880	Pfam	Protein kinase domain	313	571	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g00850	880	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	240	573	-	-
	Vian6g00850	880	SUPERFAMILY	Protein kinase-like (PK-like)	311	576	IPR011009	-
	Vian6g00850	880	Coils	Coil	831	851	-	-
	Vian6g00850	880	Gene3D	Transferase(Phosphotransferase) domain 1	311	609	-	-
	Vian6g00850	880	FunFam	Mitogen-activated protein kinase kinase kinase 2	311	598	-	-
	Vian6g00850	880	MobiDBLite	consensus disorder prediction	668	699	-	-
	Vian6g00850	880	CDD	STKc_MAPKKK	311	571	-	-
	Vian6g00850	880	ProSitePatterns	Protein kinases ATP-binding region signature.	318	341	IPR017441	GO:0005524
	Vian6g00850	880	MobiDBLite	consensus disorder prediction	861	880	-	-
	Vian6g00850	880	Coils	Coil	345	372	-	-
	Vian6g00850	880	MobiDBLite	consensus disorder prediction	731	880	-	-
	Vian6g00850	880	MobiDBLite	consensus disorder prediction	829	851	-	-
	Vian6g00850	880	MobiDBLite	consensus disorder prediction	731	804	-	-
	Vian6g00850	880	FunFam	Serine/threonine-protein kinase STE11	308	402	-	-
	Vian6g00850	880	SMART	serkin_6	312	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian6g00850	Vian-Chr6	25661416	25669368	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian6g00850	246	880	MAP Kinase Kinase Kinase	AT1G54960	55.764	0.0	671

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vian6g00850		Pkinase	5.4e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian6g00850	K20606		-	gmx:100807537	1082.78