Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00849 ATGGACAAGAGAGATAGAATGAGAGGGAGAGTGGTGTTGATGAAGAAAAATGTTTTGGACTTCAACGATTTGAGTGCCTCCTTGCTCGATCGTCTTCATGAGTTTGTGGGAAAACGCGTTTCTCTTCAACTCATAAGTGCTTCTCAAGCTGATCCTGGAACCCCAGGAGCTTTTTTAATAAGAAATCATCACCACACTGAGTTCTACCTGAAAAGCATGACACTTGAAAATGTTCCTGGCCATGGTGTCATCCACTTTAACTGCAACTCTTGGGTATACCCTGCACACAAGTATAAAAAGGATCGCATTTTCTTCAGCAACAAGGTAAAGCAGCAAAATGCCAGAAGTGAGAGTAGATTGAATTTGGCCATGAGCTTGGACATCTATGTTCCAAAGGATGAAAGATTTGGACACTTGAAATTGTCAGACTTTCTTGCTAGTGCACTGAAGTCCATAGTTCAAGTTATCAAACCTGAGCTGGAATCTCTATTTGACAGCACCCCTGATGAGTTTGATAGCTTTGAAGATGTGTTTAAACTCTATGAAGGTGGGATCAAGGTGCCTGAAGGTATACTTAAGAATGTTAGAGATAAAATCCCTGCAGAGCTGCTCAAAGAAATTCTCCGAACTGATGGAGAAAGGTTCCTCAAGTTTCCCGTGCCTCAAGTGATTAAAGAAGATAAGTCTGCATGGAGAAGCGATGAAGAATTTGCTAGAGAGATGTTGGCTGGTGTAAACCCTGTTATTATTCGCTGCCTCCAAGTACGAGCAAGTGATTTTAGCCTTAATGAATTCCCACCAGCAAGTAAGCTGGATGGTAAAGTCTATGGCAACCAAACCAGTACAATAAGGAAAGAACACATTGAGAGCAAAATGGATGGGCTCACAGTAGATGAGGCTATCAGACATAAGAAGCTGTTCATATTAGATCACCATGATGCGCTGATACCATACATGAGGAGGATAAACTCCACTTCTACAAAGACTTACGCCAGCAGAACAATTCTTTTCTTGCAAAACGATGGAACTTTGAAGCCATTGGCTATTGAGTTGAGTTTGCCACATTCTGAAGGAGACCAATATGGTGTCATAAGTAAGGTTTACACTCCTGCAGATGAGGGTGTTGAAAATTCCATCTGGCAGTTAGCTAAAGCTTATGTAGCAGTAAACGACTCAGGCTATCATCAGCTTATAACCCACTGGTTGCACACTCATGCAGTGATTGAACCATTCATCATAGCTGCAAATAGATGTCTTAGCGTGCTTCACCCTATTCATATACTCCTGCATCCACACTTTCGTGACACCATGAACATAAATGCACTAGCAAGACAAATCCTCATCAACGCCGGTGGCTTTTTAGAGGCCACAGTTTTTCCATCAAAGTATTCCATGGAGATGTCATCTGTGATTTATAAGAACTGGAATTTCCCTGACCAAGCATTACCCACAGATCTCATCAAGAGAGGAATGGCGGTTAAAGATTCCAGCTCTCAACACGGCCTTCGACTTGTGATTGAGGATTATCCGTACGCTGTTGACGGGCTAGAGATTTGGTTTGCAATAAAGAACTGGGTTCAGGAATATTGCTCCTTTTACTACCAGGATGATGACACGGTTAAGGAAGATCGAGAACTACAATTTTGGTGGAAGGAGTTAAGAGAGGAGGGTCACGGTGACAAGAAAAATGAGCCTTGGTGGCCAAAGATGCAGACTCGTGAAGACCTCGTAGAAGTGTGCACTATCATCATATGGGTTGCTTCAGCCCAGCATGCATCCACCAACTTTGGCCAATACCCTTATGCAGGTTTCCTTCCAAACCGTCCAACCATAAGCCGAAGATTCATGCCTGAGGAAGGAACTCCTGAATATGATGAACTTGTGGACAACCCTGAGAAGGCTTTTCTGAAAACAATCACAGCACAGTTGCAGACCCTTATAGGCATTTCACTCATAGAAATATTGTCTAGGCACTCTTCTGATGAGGTGTACCTTGGACAGAGAGACACTCCTCACTGGACTTGTGATGTGGAACCATTGAAAGCCTTTGAGAAGTTTGGAGAAAAGCTGGCGCAAATCGGAGTAAGGATTGTGAAAATGAACACTGATGGGAAACACAGAAACAGAGTTGGACCAGTTAACATGCCTTACACTTTGCTTTATCCCAGCAGCAAAACTGGACTCACTGGCATGGGAATTCCCAACAGTGTCGCAATTTAA 2220 0.4302 MDKRDRMRGRVVLMKKNVLDFNDLSASLLDRLHEFVGKRVSLQLISASQADPGTPGAFLIRNHHHTEFYLKSMTLENVPGHGVIHFNCNSWVYPAHKYKKDRIFFSNKVKQQNARSESRLNLAMSLDIYVPKDERFGHLKLSDFLASALKSIVQVIKPELESLFDSTPDEFDSFEDVFKLYEGGIKVPEGILKNVRDKIPAELLKEILRTDGERFLKFPVPQVIKEDKSAWRSDEEFAREMLAGVNPVIIRCLQVRASDFSLNEFPPASKLDGKVYGNQTSTIRKEHIESKMDGLTVDEAIRHKKLFILDHHDALIPYMRRINSTSTKTYASRTILFLQNDGTLKPLAIELSLPHSEGDQYGVISKVYTPADEGVENSIWQLAKAYVAVNDSGYHQLITHWLHTHAVIEPFIIAANRCLSVLHPIHILLHPHFRDTMNINALARQILINAGGFLEATVFPSKYSMEMSSVIYKNWNFPDQALPTDLIKRGMAVKDSSSQHGLRLVIEDYPYAVDGLEIWFAIKNWVQEYCSFYYQDDDTVKEDRELQFWWKELREEGHGDKKNEPWWPKMQTREDLVEVCTIIIWVASAQHASTNFGQYPYAGFLPNRPTISRRFMPEEGTPEYDELVDNPEKAFLKTITAQLQTLIGISLIEILSRHSSDEVYLGQRDTPHWTCDVEPLKAFEKFGEKLAQIGVRIVKMNTDGKHRNRVGPVNMPYTLLYPSSKTGLTGMGIPNSVAI 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00849 739 ProSitePatterns Lipoxygenases iron-binding region signature 1. 395 409 IPR020833 GO:0016702|GO:0046872
Vian6g00849 739 Pfam Lipoxygenase 109 722 IPR013819 GO:0016702|GO:0046872
Vian6g00849 739 PRINTS Plant lipoxygenase signature 102 123 IPR001246 GO:0016491
Vian6g00849 739 PRINTS Plant lipoxygenase signature 76 94 IPR001246 GO:0016491
Vian6g00849 739 PRINTS Plant lipoxygenase signature 652 666 IPR001246 GO:0016491
Vian6g00849 739 FunFam Lipoxygenase 230 372 - -
Vian6g00849 739 Gene3D PLAT/LH2 domain 52 109 - -
Vian6g00849 739 SUPERFAMILY Lipoxigenase 100 739 IPR036226 -
Vian6g00849 739 FunFam Lipoxygenase 140 229 - -
Vian6g00849 739 FunFam Lipoxygenase 374 738 - -
Vian6g00849 739 PRINTS Lipoxygenase signature 415 435 IPR013819 GO:0016702|GO:0046872
Vian6g00849 739 PRINTS Lipoxygenase signature 377 394 IPR013819 GO:0016702|GO:0046872
Vian6g00849 739 PRINTS Lipoxygenase signature 395 412 IPR013819 GO:0016702|GO:0046872
Vian6g00849 739 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 57 739 IPR013819 GO:0016702|GO:0046872
Vian6g00849 739 SMART LH2_4 5 107 IPR001024 GO:0005515
Vian6g00849 739 Gene3D PLAT/LH2 domain 1 51 - -
Vian6g00849 739 Gene3D - 373 738 - -
Vian6g00849 739 Pfam PLAT/LH2 domain 55 105 IPR001024 GO:0005515
Vian6g00849 739 Gene3D - 230 372 - -
Vian6g00849 739 PANTHER LIPOXYGENASE 5 739 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vian6g00849 739 Gene3D - 140 229 IPR027433 -
Vian6g00849 739 ProSiteProfiles PLAT domain profile. 1 106 IPR001024 GO:0005515
Vian6g00849 739 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 6 108 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00849 Vian-Chr6 25640321 25648240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00849 108 739 Acyl Lipid Metabolism Gene Families AT1G55020 67.666 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00849 K15718 - gmx:100815550 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00849 6 25640321 25648240 Vian6g00849 6 25640321 25648240 ECH
Vian6g00849 6 25640321 25648240 Vian3g01388 3 15233051 15246686 PCT