Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00848 ATGTCAGATTCACAGTCCAATTCTGAGATCTTCACCATTCGGATTGTCTCCATCGACTATTACATGGCGCCGCCAATCCCCGACGCCGATATCTGTTATAGTAGCTTCCACGGTGGAGAGGTGAACGAGGTGCCTGTGATAAGAGTGTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACGTGCATCGAGCTTTACCCTATTTGTATGTGCCGTGTTCGGATATACCACTTCAACTGGACCAAGGTAATAGCAAGTCACATTTACCAGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAGTGCTGGTTCTACAAGACAGCATGTACATGGATGCAGTATTGTACAAGCAAGGAAATTCTATGGCTATCATTCACTTGAGGAGTTATTTGCTGGAGCTGTTCTTGATAAAAGTTTACAGCCATATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCAATTGCATCTATCAAAGATGAAGTTCCGCCACCCGATACCTGACACTTTCAAGAAATTAAATATTGATGGCCAGCATACAAAGGCAGATCTACTTTCTCATGCATGTCTAGAGTCAAAATATTGGATGTCTTCCACAATTCCATCTGAGTGGATATGGTTACCCACAAGCAAATCCAGTGCTTCTTTAAATGATAAGGCTCACTGTCCTAAACGCCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTGAATGACATATCTGTTGTGGCAGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATACCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAACAGAAACGGACCGGGATTCATGAGGCTACTATGCCTTCTGGTCCTGGCAAACCACTTCCAGAAGATGTTATGAAACTTTTCTCTGTTGGTCTGGACTTTGAGAAAAAATTTATTGAGTTATGCAGTGAAGTTGGAACCTTATTTTGTACTCCTTCTGGGAAGGAATTGAGGGAAACAGACATAATAGGGTCAGCATCACCACCTGCTACATTATGCAAAAATGCCAAATTGCAAACAGAAGGGACTGATGCCAATCTTGAAATGTTGACTATGGATGAAATTCAGTCAACTGAAATGATTGGATCGGTGGACATAAAGGCAATACCGCACAGGGGTGCTGTTGATAAGGAAGCGAAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGTAGAGGATATAAACTCTGATGATGATCTTGCTTATGAAACAATCTTGACTCCCTTGCTGCCTGCTGCAACAATTGATAAAGTGTTGGAGGAAGCTAATATTGCCTATGAGAGTGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAACTGATGATATGCTTGAGTTGGAGTTACCAAAGGAAAAGCCTTTTCTTTCCTTTGGTTACAATTGTTCTATTGGAAATCGGAAATTACCCCAAGTTGATGGTTCTAATGATGAGTTCTCAGGTCAATGTGGTAGTTTGGCTGGAACCTCTTCTCCAGCAGATATAAACAGTGAATTCAAAAGCGCCTCTGAGTACCATGTTCTGCATAGTACAGGCACGAGCACAGTTAGTAAAGATAGAAGGAATAAGAAATGGGGGTCTTTGCCTTTATCTGCAATTGATCAGGTTAATAACAATGGAGAACGAGCTACTTTACTTGTGACTCATCCAGTTGAAAGTGATATTGGAGATTCTGCTTGCTCAGATCACCTAACTATAAATGAGGTTAGCAGTAGTGCTTGTATTTTAAGGAACAAGGACAAAAATGCTTTAGATTCGAAAGAAGTACACAGATCAGTTACCTGTTCTTTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACAAGCTGAATACGACTCGGGAACTACTAAAAAGCTTCTTTTAGACAGGCTTGAGGAACCAGATGTATGCTTTGGGCAAAAGCAACTGGATTTAAAAACAATGGAACTTGATGTAGAAGAAATGGAAAACCAAAAGATTTGTGAACTTGAAGTTAGCAATCATGCTAATATATTGCATGGGAAACTGCTCCTTTCAACTTGCAGTGATGGTCCTTTACACGGTAGTAGGCCAAAAGATGAATGTTTTGGTCAACATGAAATGGAAGGTATAGAAGCGAGTACATTATTGAGGAACTGTACAAAAGGAGGTTCTGCTTTAATGCATGATGGACCAGGGCTCCATAAGCCTGAAAAATTATGTTTATTTGATTCCATAGATCAATCTGTGGCTTGCAGGGATGAAAACCTTAAGGGTGGCTTGACTTTTACAAAGCATGTAGCTTCTGATGCATATATTAAAAGTCCCTTTTTAGACACTCAGTTCAGAACAGCTGCTGTTCATGAAGTCAGAGCTCCCGAGAGCAGTCCACAAACTGATTCTTCTGCTTCAACTAGTGTGCAGAGCTCGTTCATTATTGATAGAGTGTCTGTATTGCTTAGTGAAAAGCTGGATAATCACAAGGTGGATGGAAATTTGTTGCATGAGATCATTGACTCTGAACCCACTGACCTAAAGGGTAATCACCCGAAATTAACTGAAGTAACCACAAGCAAGAATCCTCTGGTTGATAAGAATCTTGAAAGTACAGCAACCTGTAATACCTATTTACATTTGGATGAAGATAGCTCTGATGAAATGACAGAATTGAGCCTATCTCATCCTAGGGTGATGGTGAGCCTTGCGCCTAGGGTGATGAAGGAAATTGAAGACCATCATGACCTTCCACCTTCACAGTTTGTCATCGGCGTGCTGTCATTTCCGTTGTTCGCTGTGAGGGGGAGTGATGATCTGAATGTCTTTCTTCCGATTTCTGCAAGGAATTCTAAGAAAGGGATGGAAACTTGCAACGAGTATGTTACCAATAAAACCCTTACATCTAATGGGACAAAGGTTGCCAACACTCTCTACCAAAATGATGGCTCTCACCTTTACCTATTAACGCCTAATATTTTGCCTCCTTCTGTGGATACTGTGCATAGATGGCTACTTTGTAATGAGAGAGGGCATATTGTTGAGCATATACATCAAGAAACAGATGCAGAGAACAAGGATGTACCTAAATGTGCTTCTGAGACTGAACCTCCTCTTAGGCCTAAGCTGCATGAAGATGCTGAATCAGAACAGAGCCCCGAATGCAATAGAGAAGGACAAACAGAAAGAGTGAAAACACTTCTTGATGACTCACAAGATACTTCTCAGATATCTGCCCCTGATGGAAAATCAATCTATACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAACTGACATTACTTAGTATAGAGATTCTTGCAGAGTCTAGAGCAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTATAGCTCTTGGTTTTCAGAATGATAGTGATTCTGATGTTGAAGTTCTAGTTCTTTTACACAGTAAATTCGTAACTTGTCAGAGAAATTTTGATGGTCTATCTGGCTCTAAAGTATTAGTCTTCACTGATGAAAAGCTATTGTTAAAAGAATTCATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGAGCATCCCATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCATCTGAGTCTTTGATATCTTCTGATGATATGAAAAGTTCTGAAAAAGATATCTTGGAGCTGGACATTGATGACACTCCTAGTCTAGATTGTTGTGTGCCAGAAAATTCAATAATCGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGTAGAATTGTTCTTAATGTATGGCGATTGATCCGTGGAGAAGTTAAGTTGAACTTATATTCAGTTGAATCTGTAGCTGAATCTGTATTGAGGCGGAAAATTCCTTTGTTTCACCACAAAGTGCTGACAAAGTGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTGATCGAGAGAGTAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTCTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTACCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAGTGCCTTCCTCTAGTAATGGAACCAGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTCTGCACTTGTCTGGGTAAAGTTGTGGGATCAAAGGCTAATACACTTGGGGTTAGTCCCTTCTCACCAGAGCAACATGTTCTGCAGGAGTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATATTGACTACTAGAATTATGGTAAAACAAGCAATAAAAAAATTGGCTCCTGCAGAGAAAGTTCTTCAGCGGATATTTAATGCGAGACAGCTTGCTTTGAAGCTCATAGCGAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTTCAGTGTGGTCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCAACATGAAAAGTGGAATGCTAGAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTTCTTAAAGGACGCACTTTGAAAGAGTCTTTCCAAATTGGGAATGAGATTGCCTCTGCCATCTCTGCTATGAATCCAAACCCTGTCTCCTTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTTCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGTCCTCATCAAATGGAACCTGTTTTTGATGCCAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAGATACTGGAGAAGTCTTTGAGACTCTTTTTTCAGCAAAAGGATTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGGAAAATTCTGCCTTAAAGATTTTATCTTTGCGAAGGAGGTTCGGTTGGGTACCTACAGTGCAAGAATGTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGACGGTTGACCGCAGGGCAGAACCACGTTATGCTGAGAGAATACCCTATGTTGTAATCCATGGGGAGCCTGGAGCCCGTTTGGTTGATATGGTTGTGGATCCCTTGGAAGTTTTGGCAATTGATTCCCCGTATAGAATAAATGATTTATATTATATTAATAAACAAATAATACCAGCTTTACAACGGGTATTTGGGCTTGTTGCTGCTGACCTCAACCATTGGTTTTCAGAGATGCCTCGTCCCACAAGGGAAGCTTCTGCAAAGCATAAATTAACTTCAAATTCCCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATCTGTCTATGTACTTGGATTAGTTTGCAGCTTTCTTGGAATGGTTCTGAATAAAACGAATCAAATTTGTATAATTCTTGCAAATTTTAAAAAATTTACAAAAATGAGAATTGCATTGGTTTGTTCTGAAATTTTTAATGATATATTTGTTTTACTTCTCATAATTTCTCATATCCATGGAGGTTTTAAGGTTCAATCCGCCTATAGTCATTGTAAAAGCCATTCTTATTCCATATTCATTTTGGTTCGGAAATTGCTTCATGAGGTTGTCAAGCTGAGTTCGGTTCCCATTGATCCAAATCTCCCCCCTTCTTGTGATGCCAAGCGTCCCAAGAGACAGTTGCTGCCAGGAGAATGGGAGTGTACTGAGTAA 6021 0.4046 MSDSQSNSEIFTIRIVSIDYYMAPPIPDADICYSSFHGGEVNEVPVIRVYGSTPAGQKTCLHVHRALPYLYVPCSDIPLQLDQGNSKSHLPVAASLEKALKLKGSAGSTRQHVHGCSIVQARKFYGYHSLEELFAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGQLHLSKMKFRHPIPDTFKKLNIDGQHTKADLLSHACLESKYWMSSTIPSEWIWLPTSKSSASLNDKAHCPKRQSICELEGDTSVNDISVVAEILNQQFKMYSSLSQTCSDTNMVQSLVPIWEEQQKRTGIHEATMPSGPGKPLPEDVMKLFSVGLDFEKKFIELCSEVGTLFCTPSGKELRETDIIGSASPPATLCKNAKLQTEGTDANLEMLTMDEIQSTEMIGSVDIKAIPHRGAVDKEAKNLLKWLATSQAVEDINSDDDLAYETILTPLLPAATIDKVLEEANIAYESESQKECQDILDSTDDMLELELPKEKPFLSFGYNCSIGNRKLPQVDGSNDEFSGQCGSLAGTSSPADINSEFKSASEYHVLHSTGTSTVSKDRRNKKWGSLPLSAIDQVNNNGERATLLVTHPVESDIGDSACSDHLTINEVSSSACILRNKDKNALDSKEVHRSVTCSLRDLMRRKRSYRVEQAEYDSGTTKKLLLDRLEEPDVCFGQKQLDLKTMELDVEEMENQKICELEVSNHANILHGKLLLSTCSDGPLHGSRPKDECFGQHEMEGIEASTLLRNCTKGGSALMHDGPGLHKPEKLCLFDSIDQSVACRDENLKGGLTFTKHVASDAYIKSPFLDTQFRTAAVHEVRAPESSPQTDSSASTSVQSSFIIDRVSVLLSEKLDNHKVDGNLLHEIIDSEPTDLKGNHPKLTEVTTSKNPLVDKNLESTATCNTYLHLDEDSSDEMTELSLSHPRVMVSLAPRVMKEIEDHHDLPPSQFVIGVLSFPLFAVRGSDDLNVFLPISARNSKKGMETCNEYVTNKTLTSNGTKVANTLYQNDGSHLYLLTPNILPPSVDTVHRWLLCNERGHIVEHIHQETDAENKDVPKCASETEPPLRPKLHEDAESEQSPECNREGQTERVKTLLDDSQDTSQISAPDGKSIYTPLSQIGFRDPASVGCGQQLTLLSIEILAESRADLLPDPQFDGINIIALGFQNDSDSDVEVLVLLHSKFVTCQRNFDGLSGSKVLVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESLISSDDMKSSEKDILELDIDDTPSLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVESVAESVLRRKIPLFHHKVLTKWFSSGPGRARYRCIKYVIERVKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVGSKANTLGVSPFSPEQHVLQELKDQILLTPNGVMFVPSKVRRGILPRLLEEILTTRIMVKQAIKKLAPAEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNQHEKWNARVIYGDTDSMFVLLKGRTLKESFQIGNEIASAISAMNPNPVSLKMEKVYHPCFLLTKKRYVGYSYESPHQMEPVFDAKGIETVRRDTCGAVAKILEKSLRLFFQQKDLLEVKTYLQRQWKRILSGKFCLKDFIFAKEVRLGTYSARMSSLPPAAIVATKAMTVDRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPYRINDLYYINKQIIPALQRVFGLVAADLNHWFSEMPRPTREASAKHKLTSNSHRTRIDYYYLSKHCVLSVYVLGLVCSFLGMVLNKTNQICIILANFKKFTKMRIALVCSEIFNDIFVLLLIISHIHGGFKVQSAYSHCKSHSYSIFILVRKLLHEVVKLSSVPIDPNLPPSCDAKRPKRQLLPGEWECTE 2006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00848 2006 PRINTS DNA-directed DNA-polymerase family B signature 1448 1461 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian6g00848 2006 PRINTS DNA-directed DNA-polymerase family B signature 1613 1621 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian6g00848 2006 PRINTS DNA-directed DNA-polymerase family B signature 1557 1569 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian6g00848 2006 Coils Coil 664 684 - -
Vian6g00848 2006 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1883 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vian6g00848 2006 Pfam DNA polymerase family B 1389 1836 IPR006134 GO:0000166|GO:0003677
Vian6g00848 2006 Gene3D Palm domain of DNA polymerase 1434 1679 IPR023211 -
Vian6g00848 2006 Gene3D DNA Polymerase, chain B, domain 1 29 177 - -
Vian6g00848 2006 FunFam DNA polymerase zeta 1515 1574 - -
Vian6g00848 2006 Gene3D - 1690 1858 IPR042087 -
Vian6g00848 2006 MobiDBLite consensus disorder prediction 1036 1099 - -
Vian6g00848 2006 FunFam DNA polymerase 1130 1431 - -
Vian6g00848 2006 SUPERFAMILY Ribonuclease H-like 35 1395 IPR012337 -
Vian6g00848 2006 FunFam DNA polymerase 30 177 - -
Vian6g00848 2006 CDD DNA_polB_zeta_exo 1120 1370 - -
Vian6g00848 2006 FunFam DNA polymerase 1690 1858 - -
Vian6g00848 2006 Gene3D Helix hairpin bin 1514 1574 - -
Vian6g00848 2006 CDD POLBc_zeta 1396 1844 - -
Vian6g00848 2006 Gene3D - 1153 1431 IPR036397 GO:0003676
Vian6g00848 2006 MobiDBLite consensus disorder prediction 1036 1086 - -
Vian6g00848 2006 Pfam DNA polymerase family B, exonuclease domain 1121 1261 IPR006133 -
Vian6g00848 2006 SUPERFAMILY DNA/RNA polymerases 1435 1849 IPR043502 -
Vian6g00848 2006 ProSitePatterns DNA polymerase family B signature. 1615 1623 IPR017964 GO:0000166|GO:0003676
Vian6g00848 2006 SMART polmehr3 1121 1627 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00848 Vian-Chr6 25601457 25639060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00848 39 207 Core DNA Replication Machinery Family AT5G63960 26.425 4.66e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00848 K02350 - gmx:100777934 2937.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00848 6 25601457 25639060 Vian6g00848 6 25601457 25639060 ECH