Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00847 ATGGGGGAGTTGAGGGGATTTAACATTGGCGGTGAATTATCGATCACGAGGTGCACTGCATGTTCCATTTCTGAGGAGAGGGGGTCCTCTGCTGCGAGGATTCCCGGCGTTGGTATTGGATTTGTTGGGGAAATGTTTGCTCCGGTTGCGGATGGGGCATGTGAGGGAAGTGGAGTTTCAGGATCCATTATGATTCCTCAACGCTTTGTGTGGCCTTATGGAGGAAGAAGGGTGTTTTTGAGTGGTTCTTTCACGAGATGGTCAGATCATATAGCTATGTCTCCGATGGAGGGGTGCCCTGCTGTGTTTCAAGTTGTTTGCAACTTAATGCCGGGGTTTCATCAGTACAAATTTAATGTAGATGGTGAGTGGAGGCACGATGAGCAGCAGCCATCTGTAAGTGGAAGCTGTGGAGTAGTGAATACTATTTATTTAGTGAGAGAACCAGATACATTACCTTCAATCTTAAGTAATGAGGCACCTGGTAGATCCCAAATGGAGATTGACAATATGGAAGCTAATTCCAGGATGCCCGTGTCTGATCTGGTGCTCTCTCGCCAGCGTATATCTGTGTTCTTGTCTACACATACTGCTTATGATTTGCTTCCTGAGTCAGGGAAGATCATTGCCTTGGACATAAATTTACCTGTTAAGCAAGCATTCCATGTTCTTTATGAACAGGGCGTATCTATGGCTCCTCTATGGGATTTTAGCAGGAGTCAGTTTGTTGGAGTTCTTAGTGCAATGGACTTCATTCTAATACTGAAAGAGCTGGGAAATCATGGTTCGAATTTGACTCAAGAACAACTTGAGACTCATACTATAGCAGCCTGGAAAGAGGGAAAATTACAGCTACGCAGAACACTTGATAGTAATGGAGGATCACATCCCTGGCGATTTGTTCATCCTAGCTTGAGTTCCTTTGCTGGCTTTGACAGTTTGGGCAATGTCCCAGTCCGGTCCACTACAATGGCTATGAGCAGGATGATTAGAATGGAAATTTCCCTGTTTTATTATGGAATGCTATCAAGCACTTCTAGTTCCATTTCTTGTGTTGTGGCCGGACCACATGAATGTCTAAAGGACGTGGCTTTGAAGATTTTGCAAAACAAGGTATCAACTATTCCTATCATCCATTCTTCTTCAGAGGATGGTTCATTTCCCCAACTGCTACATCTTGCTTCCCTATCAGGAATACTGAAAGGTATTTGCAGACATTTTAAGCACTCCTTGAGTTCTTTGCCCATTCTTCAACATCCAGTGGGTTCAATACCTTTGGGTGCATGGATGCCTAAAGTTGGGGAATCAAATGGACGGCCACTAGCAATGCTGAGACCAAGTGCTTCTCTTGGTGCTGCTCTGTCAATGTTTGTTCAAGCTGAAGTTAGCTCAATACCGGTTGTGGATGACAATGATTCTTTGCTGGACATTTATTCAAGAAGGTGGTATTCCTTTCCTCCCCCCTCTCACCCCCTCTTTTGTCCCATGTGTATGATTGAAAGGTTTCCTCCAGCCTATATTAAATGTGCCTATTATTCTACTCTCAGCGATATTACAGCATTGGCTAAAGATAAAGCATATGCTCGAACATCTCTCGAGGAAATTAGTATTCACCAGGCATTGCTTTTGGGACAAGATGCAAATTCTCCTTATGGGCTTTACAACGGTCACAGATGTCACATGTGTTTGAGATCTGATTCGTTGCACAAAGTGATGGAGCGGCTGTCTATTCCTGGGGTTAGAAGACTTGTGGTTGTGGAGGCTGGCAGCAAGCGCGTGGAGGGAATTATTTCTTTAAGTGATGTGTTCAGATTCTTGTTAGGCTAG 1827 0.4423 MGELRGFNIGGELSITRCTACSISEERGSSAARIPGVGIGFVGEMFAPVADGACEGSGVSGSIMIPQRFVWPYGGRRVFLSGSFTRWSDHIAMSPMEGCPAVFQVVCNLMPGFHQYKFNVDGEWRHDEQQPSVSGSCGVVNTIYLVREPDTLPSILSNEAPGRSQMEIDNMEANSRMPVSDLVLSRQRISVFLSTHTAYDLLPESGKIIALDINLPVKQAFHVLYEQGVSMAPLWDFSRSQFVGVLSAMDFILILKELGNHGSNLTQEQLETHTIAAWKEGKLQLRRTLDSNGGSHPWRFVHPSLSSFAGFDSLGNVPVRSTTMAMSRMIRMEISLFYYGMLSSTSSSISCVVAGPHECLKDVALKILQNKVSTIPIIHSSSEDGSFPQLLHLASLSGILKGICRHFKHSLSSLPILQHPVGSIPLGAWMPKVGESNGRPLAMLRPSASLGAALSMFVQAEVSSIPVVDDNDSLLDIYSRRWYSFPPPSHPLFCPMCMIERFPPAYIKCAYYSTLSDITALAKDKAYARTSLEEISIHQALLLGQDANSPYGLYNGHRCHMCLRSDSLHKVMERLSIPGVRRLVVVEAGSKRVEGIISLSDVFRFLLG 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00847 608 CDD E_set_AMPKbeta_like_N 66 146 - -
Vian6g00847 608 Gene3D - 183 408 IPR046342 -
Vian6g00847 608 ProSiteProfiles CBS domain profile. 201 263 IPR000644 -
Vian6g00847 608 Gene3D - 409 481 IPR046342 -
Vian6g00847 608 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 177 606 - -
Vian6g00847 608 FunFam Sucrose nonfermenting 4-like protein 62 146 - -
Vian6g00847 608 Gene3D - 508 608 IPR046342 -
Vian6g00847 608 SUPERFAMILY CBS-domain pair 423 607 IPR046342 -
Vian6g00847 608 SMART cbs_1 207 256 IPR000644 -
Vian6g00847 608 SMART cbs_1 558 607 IPR000644 -
Vian6g00847 608 SMART cbs_1 440 486 IPR000644 -
Vian6g00847 608 Pfam Glycogen recognition site of AMP-activated protein kinase 65 150 IPR032640 -
Vian6g00847 608 SUPERFAMILY CBS-domain pair 188 409 IPR046342 -
Vian6g00847 608 Gene3D Immunoglobulins 62 147 IPR013783 -
Vian6g00847 608 SUPERFAMILY E set domains 65 147 IPR014756 -
Vian6g00847 608 Pfam CBS domain 439 481 IPR000644 -
Vian6g00847 608 Pfam CBS domain 559 607 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00847 Vian-Chr6 25587507 25596641 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00847 - - gmx:100778117 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00847 6 25587507 25596641 Vian6g00847 6 25587507 25596641 ECH
Vian6g00847 6 25587507 25596641 Vian3g01389 3 15249644 15263664 PCT