Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00828 ATGGGTCTTGGAAACGATGACGATGATGGAGACACGAAGAAGTCCTTTGGTTCAGTGGCTTGTTCGATTTGCCTTGAGTTTGTTTCGGATAACGGGGATAGATCCTGGGCCAAGCTTCAATGCGGACATGAATTTCATCTTGACTGCATTGGCTCGCACTTCAATGTAAAGGGGGCAATGCAGTGCCCCAATTGTCGTAAGATTGAGAAAGGTCAGTGGCTTTATGCTAATGGTGGTCGATCATATCCAGAATTTAGCATGGACGAATGGTCTCAAGATGAGGATCTGTATGATGTTAGCTACTCTGAAATGTCCTTTGGCGTTCACTGGTGCCCATTTGGAAACTTGACCCGGCTTCCTTCATCTTTCGAGGAAGGGGATTTTTCATCAACTGCATATCCTGATATGCTGGGACATCAAGCTATATTTGCTGAACATGCAGCAGCTGTATCATCTTCTAGTCATCCTTGCCCATATATTGCCTACTTTGGACCAATACATCCCTCCACTTCCAACTCTGGTGGAACAGTTTCCGAAGCTTCTAATTTCAGCCACTGGAATGGTGTACCTGGTGACATGCCAACCTCCTACACATTTCCTGCTGTTGATCTTCATTATCACAGTTGGGATCACAATTCCTCTCATTTTTCTTCTGCCAGCAGCCGTCTAGGCACCACAGATCAGATCTCAGTATCACCTGGTAGTCAAAGGCCAGCCAGGGGTGTTTCAGAGGTCCCCAGATCCGGATCTTTTATGCATCCCTTCCTTGTTGGTCACAGTTCTGCTGCTAGGGCTGGGAACACTGTTCCATCTTCAATGATCCCTCCTTATCCTGGTAGCAATGCTCGGGCCCGTGATAGAGTTCAGGCTCTTCAAGCATACTATCAACCTCAGAGACATCATAATTCTGCCTCAGTACGGACACCTGTTGCTTCTAGCACTCGAAGATCCAGTAGTCATAGTGGGTCAGTTCACTTACCACCAGTGGCCTCGTCACCGGACCAAAGTAGTGGCTTCGTTTATATCCCAGGTTCTTCAGCACACAATTTTCCAGAAGAAACTCATCTACATAGTCGCTTCCATGCTTGGGAAAGAGATCATTTGCCTTCATTGGCATTAAACCATGTTGGTAGAGAATCAAGTTGGCGAGCATACCACCAGACTGCCAGTGTGTCAGACCCAAGTATCAGATCCAGCAGCTTTCGATTACGGCATGAATCGGAAAGAATGCCTTCACAAAATCGAGGTGCGTATAATATAACAGGAAAAATGAGTCGAGGAAGTGCAGCAGGAGCGAAGGGGAAGAAGAAGGGGGCGACATTCACCATTGACTGTGCAAAGCCAGTGGAAGACAAGATCATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTCGGTGGCAAGGCTGGTGCCCTCGGTGACTCTGTTACTGTTACCCGCGAGAAGACCAAGATCATTGTCACCTCTGACAGTAACTTCTCCAAAAGGTATCTGAAGTACTTGACTAAGAAGTACTTGAAGAAACACAATGTGCGAGACTGGCTCAGAGTGATTGCTTCGAACAAGGATAGAAATGTTTATGAATTGAGGTACTTCAACATTGCTGAGAATGAGGGTGAGGAGGAAGATTAG 1644 0.4653 MGLGNDDDDGDTKKSFGSVACSICLEFVSDNGDRSWAKLQCGHEFHLDCIGSHFNVKGAMQCPNCRKIEKGQWLYANGGRSYPEFSMDEWSQDEDLYDVSYSEMSFGVHWCPFGNLTRLPSSFEEGDFSSTAYPDMLGHQAIFAEHAAAVSSSSHPCPYIAYFGPIHPSTSNSGGTVSEASNFSHWNGVPGDMPTSYTFPAVDLHYHSWDHNSSHFSSASSRLGTTDQISVSPGSQRPARGVSEVPRSGSFMHPFLVGHSSAARAGNTVPSSMIPPYPGSNARARDRVQALQAYYQPQRHHNSASVRTPVASSTRRSSSHSGSVHLPPVASSPDQSSGFVYIPGSSAHNFPEETHLHSRFHAWERDHLPSLALNHVGRESSWRAYHQTASVSDPSIRSSSFRLRHESERMPSQNRGAYNITGKMSRGSAAGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00828 547 MobiDBLite consensus disorder prediction 404 433 - -
Vian6g00828 547 SMART ring_2 21 65 IPR001841 -
Vian6g00828 547 Gene3D - 428 547 IPR038526 -
Vian6g00828 547 CDD RING-H2 21 66 - -
Vian6g00828 547 MobiDBLite consensus disorder prediction 295 337 - -
Vian6g00828 547 FunFam 60S ribosomal protein L22-2 428 547 - -
Vian6g00828 547 Pfam Ring finger domain 21 66 IPR001841 -
Vian6g00828 547 Pfam Ribosomal L22e protein family 437 545 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vian6g00828 547 ProSiteProfiles Zinc finger RING-type profile. 21 66 IPR001841 -
Vian6g00828 547 SUPERFAMILY RING/U-box 19 68 - -
Vian6g00828 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 75 IPR013083 -
Vian6g00828 547 MobiDBLite consensus disorder prediction 217 247 - -
Vian6g00828 547 PANTHER OS09G0511500 PROTEIN 2 400 IPR044274 GO:0004842
Vian6g00828 547 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00828 Vian-Chr6 25373351 25381345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00828 424 547 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 1.17e-63 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00828 - - gmx:100807331 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00828 6 25373351 25381345 Vian3g01410 3 15482029 15493539 PCT