Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00813 ATGGTTCTCTCCAAAACCGCTTCCGAATCCGACGTTTCTGTCCACTCCACCTTCGCTTCTCGCTATGTCAGAACTTCACTTCCCAGGTTCAGGATGCCGGAGGAGTCGATTCCAAAGGAAGCAGCGTACCAGATCATAAACGATGAGTTGATGTTGGATGGGAACCCAAGGTTGAACTTGGCTTCGTTTGTGACGACATGGATGGAACCTGAGTGTGATAAACTCATCATGGCTTCCATCAATAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTTCAGAACCGATGTGTGAACATGATAGCTCATCTTTTTAATGCACCACTAGAAGAATCTGAAACTGCTGTTGGTGTTGGCACGGTCGGTTCATCAGAGGCCATAATGTTGGCTGGATTGGCCTTCAAAAGGAGGTGGCAAAACAGAAGGAAAGCAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACCGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTCGCAAGGTACTTCGAGGTGGAGTTGAAGGAAGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGACCAGGCTGCGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAACGGAGAGTTTGAGGATGTCAAACGCCTCAATGATCTTCTTGTTGAAAAGAATAAGCAAACTGGGTGGGAAACTCCTATTCACGTTGATGCAGCCAGTGGTGGATTCATTGCTCCATTTATTTACCCAGAGCTTGAGTGGGATTTCCGATTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTTTGGTGTATGCTGGAATCGGTTGGGTTATCTGGAGGAGCAAGGAGGACCTGCCTGAAGAACTCATCTTCCATATCAACTATCTCGGAGCTGATCAACCCACCTTCACACTTAACTTCTCCAAAGGTTCCAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGGGCTACAGAAACGTGATGGAAAATTGCAGAGACAACATGTTGGTGCTGAAAGAGGGACTCGAGAAGACAGGGCGGTTTGCCATTGTGTCCAAAGACAATGGTGTGCCTTTGGTTGCTTTCACCCTGAAAGACCACACTCACTTTGACGAGTTTCAAATCTCTGACCTGCTGAGACGTTTTGGATGGATTGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTTACAGTGCTTCGTGTTGTCATCAGGGAGGACTTTTCAAGAACTCTTGCAGAGCGTCTGGTGGCAGATGTGGAAAAGGTGGTGCATGAGCTTGATAGCCTTCCAGCAAGGGTGATCAGTAGCACCACCGTGGCAGTCAACACAGAAGAAAATGGCAAAGTGGTTAAGAAGAGTGCTCTGGAGACACAGAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTCAATGACAAGATGAATGGTGTTTGCTAG 1506 0.4701 MVLSKTASESDVSVHSTFASRYVRTSLPRFRMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRRWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPDQAAELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKQTGWETPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCRDNMLVLKEGLEKTGRFAIVSKDNGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVVHELDSLPARVISSTTVAVNTEENGKVVKKSALETQREITAVWKKFVLERKKLNDKMNGVC 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00813 501 PANTHER GLUTAMATE DECARBOXYLASE 1 491 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vian6g00813 501 FunFam Glutamate decarboxylase 1 65 - -
Vian6g00813 501 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Vian6g00813 501 FunFam Glutamate decarboxylase 361 448 - -
Vian6g00813 501 CDD DOPA_deC_like 59 439 - -
Vian6g00813 501 Gene3D - 1 65 - -
Vian6g00813 501 Gene3D - 66 360 IPR015421 GO:0003824
Vian6g00813 501 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vian6g00813 501 FunFam Glutamate decarboxylase 66 360 - -
Vian6g00813 501 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vian6g00813 501 Gene3D - 361 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00813 Vian-Chr6 25194824 25200856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00813 1 501 Calmodulin-binding Proteins AT5G17330 83.992 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00813 K01580 - gmx:100796533 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00813 6 25194824 25200856 Vian6g00813 6 25194824 25200856 ECH
Vian6g00813 6 25194824 25200856 Vian7g01726 7 27040102 27041998 PCT