Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00807 ATGATTTGCATCACTTTGCTATCGCTTGTATCAACAGCAGCAACAACAACCAAACGCAAATCAATGTCAAAACTAACCGTTCTCTTGTTTCTTCTATTCGCATTCTTCAATTCTTCAACAGTCACCACTTTATACTCTCCTTCACCTCCCGCCTCGCCATTTTCCCAATCTACCCCTGACCCCGACTCCTCTCCACCGGCAGAGTGGCTCTTCGCCCATGCCACGCACTACGCCGCCACCGATGCTCTTGGCGGCGCGTGCGGCTACGGTGACCTTCCCAACGGCATGGCCACCGCTGCACTCAGCGAAGCCCTCTTCAACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCGCGAGGAGGACGCCGACTTCGACCGCCGCTGGTGCATCTCCGGCGCGTCGGTTGCCGTCACCGCCACCAATTTCTGCGCACCGAACTACGGATCCGACGCCGAGAGCCTCAGCGGACACTGTAACCCTCCGAAGCAGCATTTCGTTCTCCCCACCGAAGTTTTCGAGAAAATCGCAATCTGGAAAACTGGCACCGGCAACATGCCAGTGCAGTATCGCAGGATAGAGTGCAGAAGAGAAGGAGGAATGCGGTTCACATTGAGTGGTTCTGGAATCTTCATTTCGGCACTGATTAGTAATGTGGGTGGGATGGGAAACATTGTGGGTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTTCAATGGGTAGGAACTGGGGTCAGAACTGGCATGTTAATGCTTTACTGCAGAATCAACCTCTCTCTTTTGAGGTCACTGGTAGCGATGGAATCACTGTTACATCTTACAATGTTGCTCCCAAGGATTGGACTTTTGGACAATCTTTTGAAGGAAAACAATTTCGCCTGAACAGATAA 897 0.5251 MICITLLSLVSTAATTTKRKSMSKLTVLLFLLFAFFNSSTVTTLYSPSPPASPFSQSTPDPDSSPPAEWLFAHATHYAATDALGGACGYGDLPNGMATAALSEALFNRGQICGACFELRCREEDADFDRRWCISGASVAVTATNFCAPNYGSDAESLSGHCNPPKQHFVLPTEVFEKIAIWKTGTGNMPVQYRRIECRREGGMRFTLSGSGIFISALISNVGGMGNIVGVKVKGSKTGWLSMGRNWGQNWHVNALLQNQPLSFEVTGSDGITVTSYNVAPKDWTFGQSFEGKQFRLNR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00807 298 PRINTS Expansin/Lol pI family signature 68 83 IPR007118 GO:0005576
Vian6g00807 298 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Vian6g00807 298 PRINTS Expansin/Lol pI family signature 185 201 IPR007118 GO:0005576
Vian6g00807 298 PRINTS Expansin/Lol pI family signature 277 291 IPR007118 GO:0005576
Vian6g00807 298 Gene3D - 54 198 IPR036908 -
Vian6g00807 298 PRINTS Expansin signature 158 175 IPR002963 GO:0009664
Vian6g00807 298 PRINTS Expansin signature 277 293 IPR002963 GO:0009664
Vian6g00807 298 PRINTS Expansin signature 93 107 IPR002963 GO:0009664
Vian6g00807 298 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Vian6g00807 298 PRINTS Expansin signature 201 213 IPR002963 GO:0009664
Vian6g00807 298 PRINTS Expansin signature 248 269 IPR002963 GO:0009664
Vian6g00807 298 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 84 202 IPR007112 -
Vian6g00807 298 SUPERFAMILY PHL pollen allergen 199 291 IPR036749 -
Vian6g00807 298 Gene3D - 203 294 IPR036749 -
Vian6g00807 298 CDD DPBB_EXPA_N 68 197 - -
Vian6g00807 298 PANTHER EXPANSIN-A15 28 294 IPR002963 GO:0009664
Vian6g00807 298 Pfam Lytic transglycolase 98 192 IPR009009 -
Vian6g00807 298 Pfam Expansin C-terminal domain 203 280 IPR007117 -
Vian6g00807 298 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 212 291 IPR007117 -
Vian6g00807 298 SMART dpbb_1 98 192 IPR007112 -
Vian6g00807 298 SUPERFAMILY Barwin-like endoglucanases 68 220 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00807 Vian-Chr6 25119093 25120223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00807 68 295 Expansin Gene Family AT3G03220 69.231 7.16e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00807 - - gmx:100790211 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00807 6 25119093 25120223 Vian6g00807 6 25119093 25120223 ECH
Vian6g00807 6 25119093 25120223 Vian7g01732 7 27123913 27125674 PCT