Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00806 ATGGCGATTCGAGATCAGAATGGATTTAACAGATCACAGGATGATCCTTCAGTAGGAAGTGGTGTATCTTTGAGTTCTGGAGTGCATTCCGCTCCACATATTCAACTTAATGACCAGTTTTCCTGTGGGAGTGACTACGCTCTGAAGGTAAGGAAACCATATACTATCACAAAACAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGCATGGTCGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCCAAGGTTCTTCGCGACCCTACTGGGAATGTTACAAATAGAGCGGAATCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAACTAGTTGAGACTCCTAATAAAGAAACTTCAATCCCAGAACAACTTATGAAGTCTGGTTCTCTGAAGTCATCAGATTTTGATCAAGAAAACCAATCTCCGAAATCAGTATTATCAGGAGCTGGTTCAGACATCCTTAGCTCCTCAGATTCAGACACACCAAATGAAAGTTTGTCCCCCGTGTCATCCATCAGCGACATCCATACAACATCCGAAGAAGCTGGGATAAATGCTGATTCTTCTCATGATGAGAAATCTCTTATGAAATTAAAGCTTCCTACAAAGGAAAGTGTTTTCATCAAAGAAGAATCTTCCGGGCAGACTTTGAAACTCTTTGGGATTACACTTTTTGTAACAGATACATGCAAACCCTCTTCTCCAAGAACTGAAGCATGCAAACCAATACCTCTAAACATATGCAAGGGGGATGGAAGATTGGAACTTATTGGGCACATCACACCCAGTGAAACATCAGCCATATCCCTACTAAAGATGAGAGAGGGTCCTGAAACATGTGATGGAAAAGGGTTTGTGCCATATAGAAGGTGCATGGCAGGGAGAGAAAACCAGTCTTCATCTGTGACAAATGATAATAGAGAAGAGCAATGCATCCACCTTTCGTTGTAG 1047 0.4212 MAIRDQNGFNRSQDDPSVGSGVSLSSGVHSAPHIQLNDQFSCGSDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGNVTNRAESIEIPPPRPKRKPMHPYPRKLVETPNKETSIPEQLMKSGSLKSSDFDQENQSPKSVLSGAGSDILSSSDSDTPNESLSPVSSISDIHTTSEEAGINADSSHDEKSLMKLKLPTKESVFIKEESSGQTLKLFGITLFVTDTCKPSSPRTEACKPIPLNICKGDGRLELIGHITPSETSAISLLKMREGPETCDGKGFVPYRRCMAGRENQSSSVTNDNREEQCIHLSL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00806 348 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Vian6g00806 348 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Vian6g00806 348 MobiDBLite consensus disorder prediction 125 143 - -
Vian6g00806 348 MobiDBLite consensus disorder prediction 115 203 - -
Vian6g00806 348 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Vian6g00806 348 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Vian6g00806 348 Gene3D - 62 108 - -
Vian6g00806 348 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Vian6g00806 348 SMART sant 59 107 IPR001005 -
Vian6g00806 348 MobiDBLite consensus disorder prediction 148 203 - -
Vian6g00806 348 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vian6g00806 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vian6g00806 348 CDD SANT 62 105 IPR001005 -
Vian6g00806 348 PANTHER SWI/SNF COMPLEX-RELATED 44 237 - -
Vian6g00806 348 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00806 Vian-Chr6 25110604 25112714 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian6g00806 Myb_DNA-binding 5.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00806 - - gmx:780539 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00806 6 25110604 25112714 Vian6g00806 6 25110604 25112714 ECH