Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00784 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGATTAGAAGTAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCGAGCTTGCCACCCCAGTTAATTTGTCAACTGCACAATGTTACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCGTTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGCATTCCCAGTAAGCAGCCATCAAATTATTTTTGCAAGACATTAACAGCCAGTGATACCAGTACACATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCAGCACAGGAACTGATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCGAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTCGTGGCTGGAGATTCTGTGCTTTTCATTTGGAATGAGAAGAATCAGCTTCTTTTGGGAATCCGCCGTGCCAATAGACCACAAACTGTAATGCCATCATCGGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCTGCCCATGCTGCAGCGACTAATAGCTGTTTTACCGTGTTTTATAATCCGAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCTATGTACCCGTCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGAGATGAAGCAAGTAATGGGCTGATGTGGCTGAGGGGTGGAGCTGTAGACCAAGGTCTCAATTCGCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGAATGGACCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGGTTGCAGAATCTAGGCAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTTTGCAACTTCAGTCGCAGCAATCAGTTCAACAATCTGTATCTTCTAACATGCTGCAGCCACAAGCCCATGTACTGACAGAGAACCTCTCTCAGCACCTACTTCAGAAACCGCACAACAATCAAGAAGTCCAAGCGCAACAGCAGCAGCATTCTTATCAAGAATCGCTCTTAATTCCAAGTGATCAGCTCCATCAGAGACAACACTCTGGCGTTCCTTCACCATCGTATTCAAAACCAGATTTCTTGGATTCGAGCATGAAGTTCCCTGTTTCAGTTTCTCCCGGACAAAACATGCTTAGTTCACTTTGCCCTGAAGGAAGTGGAAATCTCTTGAATTTATCAAGGAGTGCTCCGTCCTTACTGAGTGAACAGCAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCTTATGGAAGCACTGTGTCGCAGACACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGATGCCCAAAATTCAACTCTATTTGGTGTCAATATTGATTCATCTGGCCTTCTTCTTCCCACCACAGTCCCTGGTTACAGCACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCTGTTTGGTTGCATGCAAGATTCGTCAGAGTTGTTGCAAAGCGCAGGGCATGTTGATCCACAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCTGTTGGGCGCTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGTGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGCAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTGAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCAGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTCAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGAATACTGA 2520 0.4607 MKLSTSGLGQQGLEVGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEASNGLMWLRGGAVDQGLNSLNFQGAGMLPWMQQRMDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQSQQSVQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSYQESLLIPSDQLHQRQHSGVPSPSYSKPDFLDSSMKFPVSVSPGQNMLSSLCPEGSGNLLNLSRSAPSLLSEQQWTQKYAPVQVNAYGSTVSQTQYSGKDSAMVLPHLNSDAQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00784 839 FunFam Auxin response factor 126 230 - -
Vian6g00784 839 Gene3D - 292 364 - -
Vian6g00784 839 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 802 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian6g00784 839 Gene3D - 126 229 IPR015300 -
Vian6g00784 839 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian6g00784 839 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vian6g00784 839 SMART B3_2 128 230 IPR003340 GO:0003677
Vian6g00784 839 MobiDBLite consensus disorder prediction 817 831 - -
Vian6g00784 839 FunFam Auxin response factor 292 364 - -
Vian6g00784 839 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Vian6g00784 839 Gene3D - 709 802 - -
Vian6g00784 839 SUPERFAMILY CAD & PB1 domains 708 787 - -
Vian6g00784 839 ProSiteProfiles PB1 domain profile. 713 797 IPR000270 GO:0005515
Vian6g00784 839 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vian6g00784 839 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vian6g00784 839 MobiDBLite consensus disorder prediction 470 496 - -
Vian6g00784 839 FunFam Auxin response factor 708 802 - -
Vian6g00784 839 Pfam AUX/IAA family 709 797 IPR033389 -
Vian6g00784 839 MobiDBLite consensus disorder prediction 817 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00784 Vian-Chr6 24835798 24841853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00784 98 805 B3 DNA Binding Superfamily AT5G37020 67.967 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian6g00784 AUX_IAA 2.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00784 - - gmx:100784373 1567.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00784 6 24835798 24841853 Vian6g00784 6 24835798 24841853 ECH
Vian6g00784 6 24835798 24841853 Vian7g01747 7 27372221 27375723 PCT