Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00737 ATGTCGTATGTGCCTCCGCACCTCCGAAATAACGGCTCCGCGACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACAACAACCACCACCACAACCATAACAACCACCACAAGCTTGCATTCACCTCCAACAACAACAACAACACCAACGCCAATGGCTCTCCCTCGCTCCCCTCCTTCCACAATGCCTCTCGCCGGAGCTCCGCCGCACCTCCGTCGCCGAGGATTTTCGCCACACCTGACCCCGTCTTCCCGCAATGGCAACCCTCTGAACGCGCTTCGCGTATGACTCCGGAGCAGATTGAAGAGGTCCGTTCCCGGCTTAATCTTGATGTTACTGTTGCATCTGATTCTCCTCCTGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGCACTCAAGTATCATGAAGGACATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAAGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTAGCCCAACCTTCAATTCGGCGCAATGATGGTCCTCTGGCATTAGTTTTGGCTCCTACCAGAGAACTAGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTTGAGTCATTAAAAACTGCTATTGTTGTGGGCGGAACAAACATTGAAAAGCAGAGGGCAGAACTTAGAGCAGGGATTGAAATAGCAGTTGCCACGCCTGGAAGATTCATTGATCACTTGCAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAAGCAGATAGAATGCTGGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCTGAGAAGCATCAAACATTGCTTTTTAGTGCAACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGACTTCTAGACTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGCCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCTACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCCAAGACCATGGAAGATTATGTACACCGGATCGGAAGGACGGGGCGTGCAGGATCAACTGGATTAGCTACTTCATTTTACACTGATCGTGACATGTTCCTTGTTGCAAATATAAGGAAGGCAATAGCTGACGCCGAATCTGGGAACACGCTGACATTTGCAACCGGAAAGGTTGCTAGACGGAAGGAGAAAGAAGCTGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATTAATATCGAAGATAAGTATAAATTCATGATTACTGCCGCAAACATTAAAAGAGAGGGCGCAGCAGATAGTGCCTGGGACGATTAA 1722 0.4675 MSYVPPHLRNNGSATVATARTPSVTLDNNNHHHNHNNHHKLAFTSNNNNNTNANGSPSLPSFHNASRRSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLHSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRAELRAGIEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASINIEDKYKFMITAANIKREGAADSAWDD 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00737 573 SMART ultradead3 147 350 IPR014001 -
Vian6g00737 573 SMART helicmild6 395 476 IPR001650 -
Vian6g00737 573 MobiDBLite consensus disorder prediction 28 98 - -
Vian6g00737 573 Coils Coil 214 234 - -
Vian6g00737 573 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 335 IPR014001 -
Vian6g00737 573 CDD DEADc 139 336 - -
Vian6g00737 573 CDD SF2_C_DEAD 347 485 - -
Vian6g00737 573 Gene3D - 88 339 IPR027417 -
Vian6g00737 573 Coils Coil 517 537 - -
Vian6g00737 573 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Vian6g00737 573 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Vian6g00737 573 Pfam DEAD/DEAH box helicase 152 322 IPR011545 GO:0003676|GO:0005524
Vian6g00737 573 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 517 IPR001650 -
Vian6g00737 573 MobiDBLite consensus disorder prediction 40 71 - -
Vian6g00737 573 Gene3D - 341 535 IPR027417 -
Vian6g00737 573 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 95 528 - -
Vian6g00737 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 496 IPR027417 -
Vian6g00737 573 Pfam Helicase conserved C-terminal domain 359 476 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00737 Vian-Chr6 24309608 24317890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00737 128 498 Eukaryotic Initiation Factors Gene Family AT1G72730 34.933 2.19e-68 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00737 K12823 - gmx:100818387 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00737 6 24309608 24317890 Vian6g00737 6 24309608 24317890 ECH