Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00732 ATGGGTGTGGTTTGTGATTTTGATTTGAGTTTTGGATTGTATTTCTTTGGCAGTGGAATTTTGGATTTTGTATTAATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCTTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCATGAGCCATTATCCGCATACGAGAATTCAGTTTTCTGCAGCAAATTTCATCACCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGTTGCATGGTATCTAGATCTTTGTTCGAGCATCTTGACTTTGGTGGTATAGGATGTGTTAGCTGTGTAAATACTAGCCAACTTAGTACGATGAGGAATATTGAAAATCCAAATGGGCCTGTTTCATTGAAAAAAAATAATTCAAGTGATCGGCCTTCTCGTTCTGAGGGAAGACTGTTTGCACGAGGTGTTGATGAAGGAAAGCTTATGCAATTCTGCAAAATTATTGAGGCCAGTGAATCCAGCCGATGGAATAATGCTCAAAAAGATGGCACCATTTCACGTCATGGGCACAACAACCAAGAAGCCAAATGTTCATTCGGGGAAGGAGACATTGGTTTTTCAAATGTGGTGAAGCCATCTGTTCAGTCATTAACATTTGCTACATTAGAAAATAATAGGTCACCATGGGAGATTAAAAACATCCACGAAGCAAATGTGCAACCATCATTGAGTATGTACCTAGGAAATGCATCTGGGAAAAACTCTGTTCTGCCTTCTGCTGGAGAGGCTGTGGAAGGAAGACTTGAGGGAAAAACATCTCCACCTTTTCATCAAGGGCAAAGATCTCGCCCTATATTTCCAAAACCGGTGAAGAGTGGGCTTACCATGAATGTGGAAATAGATAAAGGTACAATTTCTCAATCTCGAGTTGCTCGGCCACCTGCAGATGGCAGAGGAAAGAATCAGTTACTTCCTCGATATTGGCCGAGGATTACCGATCAAGAGCTGGAGCGACTATCTGGAGATTTGAAATCCACCGTTGTGCCATTATTTGAGAAGGTATTAAGTGCCAGTGATGCTGGCCGAATTGGCCGTCTTGTTCTCCCAAAAGCTTGCGCTGAGGCATATTTCCCTTCTATTTCACAATCTGAGGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAACGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTAGAATGTATGTATTGGAGGGTGTGACCCCATGCATACAGGCCATGCAATTACGCGCTGGTGATACTGTAACATTTAGTCGGATAGACCCGGGAGGCAAACTTGTAATGGGTTTCAGAAGGGCATCGAATTCTGCAGATACACAGGAGACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAGCTACCTCTGCTGGAACTGAGAATCTGCCATCAGGAAGTAATAATGCCAATCTTCTCCTTTCAATGAAGGGGAATGTGGAAACTAACTTTAATGGACAAAGAGAACATCCACTTTTGGCTACCGGAACTTCTGGGTTGCTTATAACTGAAACTAATGGGATAATGACAAACAATACTTCACTACAGAGAAAAGTTTCGGTTTCAGAGAAGAAGAAAACTCGTAATATTGGGCCTAAAAGTAAGAGGCTGCTTATTGATAATGAAGATGCTAGGGAGTTAAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATATGATGTAAGTGCAACAGTGTCAAATGAATCCATGTATTTTTATTTTGTAGGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACCTGTTCTTCTGGAATTCGGCATTGGATCTTATTTATTCTCCACAAGAGCATTTGGACTTGTTATATCGATGTGAGCAAATTTTCAACTTGTGCATGATTATGTTAACTATGTCATCCAGGGTGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCAGTTGATGCTCTTCTTCCTGCCAATTGGACATGTTTTGACAATGCTTGGGATTCAAGAAGATGTTCATGCACAGTACCTGAAGAGCTAAGTTCAGGGGAATTAGAAAGTCTTTTGAAAACCGACAAAGATTTTAAGAAGCGACGAAGTGATGAAAAGAGCATGTCAATCCAAGAACACATGGCATCTGGCTTGGAAGCTCTTGCCAGTGCAGCAGCCCTGGGAGACAATCTTGTTGACACGGCCGAATCATCGGCCGGAGCCACCACCAAGCATCCCAGACACCGTCCCGGCTGCTCTTGCATTGTGTGCATCCAGCCACCAAGTGGCAAGGGGCGACACAAGCCGACATGCGCATGCAACGTGTGCCTGACCGTGAAGCGACGGTTCAAAACCCTCATGCTGCGAAAGAAGAAACGGCAATCCGAACGTGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTCCCCAAAGAGGAGTCAGATACCAATGAAACATCAAGAGATGATGCAACTCAGTTGGAGAAAGAGGTAGTAGGACTAAGCAGAAGTCAAGCTGAAGTGGGTGAGTCCAGTGCTGCTGGACAAATTGATCTGAATTCTGATCCCAACCGTGAAGACATGGTAGTTGATTTATCAGCAATTTTCTTTTGTGAATCAGACCCTACTGCAGAACATGAATATATGAACCAAAATGATCCAAGAAGCTACACCAATGAATTGCAGAATGGTGAGAATTCTTCTTTGCACACTCCTCAATCCAATGGAGAAGGTCAGAGACACTTCTCTGATCTAAGAAGCTTTGCATCCATTATGTGGAACCAAGAAAGAAGAGATGAGGAAGACAGTGAACCCAATCAAAACCAAAACCAAAACAATCTTTGTTAA 2967 0.4321 MGVVCDFDLSFGLYFFGSGILDFVLMGSDICVVNGSCTHEWRKGWLLRSGGFAQLCCKCGFMEEWKGDIHEPLSAYENSVFCSKFHHQQTGWRECNFCNKPIHCGCMVSRSLFEHLDFGGIGCVSCVNTSQLSTMRNIENPNGPVSLKKNNSSDRPSRSEGRLFARGVDEGKLMQFCKIIEASESSRWNNAQKDGTISRHGHNNQEAKCSFGEGDIGFSNVVKPSVQSLTFATLENNRSPWEIKNIHEANVQPSLSMYLGNASGKNSVLPSAGEAVEGRLEGKTSPPFHQGQRSRPIFPKPVKSGLTMNVEIDKGTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVTFSRIDPGGKLVMGFRRASNSADTQETSTSAQSNSAKGATSAGTENLPSGSNNANLLLSMKGNVETNFNGQREHPLLATGTSGLLITETNGIMTNNTSLQRKVSVSEKKKTRNIGPKSKRLLIDNEDARELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDVSATVSNESMYFYFVGTPSFWKENYIQYLFFWNSALDLIYSPQEHLDLLYRCEQIFNLCMIMLTMSSRVKEQWAQCDDCSKWRKLPVDALLPANWTCFDNAWDSRRCSCTVPEELSSGELESLLKTDKDFKKRRSDEKSMSIQEHMASGLEALASAAALGDNLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCACNVCLTVKRRFKTLMLRKKKRQSEREAEAAQKDQVLPKEESDTNETSRDDATQLEKEVVGLSRSQAEVGESSAAGQIDLNSDPNREDMVVDLSAIFFCESDPTAEHEYMNQNDPRSYTNELQNGENSSLHTPQSNGEGQRHFSDLRSFASIMWNQERRDEEDSEPNQNQNQNNLC 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00732 988 Gene3D - 679 734 - -
Vian6g00732 988 MobiDBLite consensus disorder prediction 878 892 - -
Vian6g00732 988 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 29 611 - -
Vian6g00732 988 Pfam CW-type Zinc Finger 681 723 IPR011124 GO:0008270
Vian6g00732 988 MobiDBLite consensus disorder prediction 832 869 - -
Vian6g00732 988 MobiDBLite consensus disorder prediction 919 954 - -
Vian6g00732 988 Gene3D - 341 468 IPR015300 -
Vian6g00732 988 MobiDBLite consensus disorder prediction 137 163 - -
Vian6g00732 988 MobiDBLite consensus disorder prediction 919 988 - -
Vian6g00732 988 SUPERFAMILY DNA-binding pseudobarrel domain 361 462 IPR015300 -
Vian6g00732 988 MobiDBLite consensus disorder prediction 279 302 - -
Vian6g00732 988 ProSiteProfiles Zinc finger CW-type profile. 676 726 IPR011124 GO:0008270
Vian6g00732 988 MobiDBLite consensus disorder prediction 463 498 - -
Vian6g00732 988 SMART B3_2 363 464 IPR003340 GO:0003677
Vian6g00732 988 ProSiteProfiles B3 DNA-binding domain profile. 363 464 IPR003340 GO:0003677
Vian6g00732 988 FunFam B3 domain-containing transcription repressor VAL1 341 468 - -
Vian6g00732 988 MobiDBLite consensus disorder prediction 462 498 - -
Vian6g00732 988 Pfam B3 DNA binding domain 363 463 IPR003340 GO:0003677
Vian6g00732 988 MobiDBLite consensus disorder prediction 137 152 - -
Vian6g00732 988 CDD B3_DNA 361 462 IPR003340 GO:0003677
Vian6g00732 988 MobiDBLite consensus disorder prediction 830 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00732 Vian-Chr6 24252819 24259330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00732 24 901 B3 DNA Binding Superfamily AT2G30470 43.946 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian6g00732 B3 1.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00732 K09287 - gmx:100789848 1421.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00732 6 24252819 24259330 Vian6g00732 6 24252819 24259330 ECH