Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00716 ATGACCAGGAGAAAGGTGAAACTTGCATTCATAGAAAACGATTCTGCAAGGAAGACAACATGCAAGAAAAGGAAAAAGGGAATGCTGAAGAAGATCGAGGAACTCAGCACCCTTTGTGGAATTGATGCATGTGCTATAGTTTATGGTCCCGATGATCATGAATCAGAGGTTTGGCCATCCCATTGTGAGGTCCAAAAGGTGGTGGGAAGGTTCAGGAACATGCCTGCAGTGGAGAAAATCAAGAAGATGGTGAACCAGGAGAGCTTCATAGGACAAAGGATCCAAAAGGGTAACCAACAAATAATGAAACTTATGAAGGAGAATGCGGAGAAGGAGTTCACCTTGTTCATGTTTCAATGCCTTACTGAAGGTAGGGTTTTGCCAGATGAAAATAACATGACCTTGGCTGATTTGAATGTCCTTTCATCAGTGATTGAACAAAACCTTAAAGACATTGATAAAAGGTTGCAAACTCTGAATGTTAATCAGATACAACCGACTCAACAACCCGAGATGCAAACATCAGTATTCCAATCGCAGTTGAAAACAACATCGTACCAACCGCATTTGCAAATGGCACTTATGAGTTCTGGACATGGGTTGGATATGGATGTCAATCCCATGCAAAGGTTGTTGTTTATGAACTTGTTTAATGGTAATAGAGATGAGACAATAATGCCTCCATTTGGTGATCCTAATCTCTAG 705 0.4099 MTRRKVKLAFIENDSARKTTCKKRKKGMLKKIEELSTLCGIDACAIVYGPDDHESEVWPSHCEVQKVVGRFRNMPAVEKIKKMVNQESFIGQRIQKGNQQIMKLMKENAEKEFTLFMFQCLTEGRVLPDENNMTLADLNVLSSVIEQNLKDIDKRLQTLNVNQIQPTQQPEMQTSVFQSQLKTTSYQPHLQMALMSSGHGLDMDVNPMQRLLFMNLFNGNRDETIMPPFGDPNL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00716 234 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vian6g00716 234 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vian6g00716 234 PANTHER MADS BOX PROTEIN 3 157 - -
Vian6g00716 234 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vian6g00716 234 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Vian6g00716 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian6g00716 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian6g00716 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vian6g00716 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00716 Vian-Chr6 24011838 24012542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00716 1 159 Type I MADS-box Gene Family AT5G48670 51.572 7.99e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian6g00716 SRF-TF 9.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00716 - - vra:106752453 397.127