Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00715 ATGTCCAGAAGAAAGGTGCAACTCACATTCATAGCCAATAACTCAGATAGGAAGGCATCATATATCAAAAGGAAGAAGTCACTGCTGAAGAAGACAGAGGAAATCAGCACCCTTTGTGGTGTTGAAGCATGCACAATAGTTTATGGCCCTTATGCTCCTGTGCCAGATGTCTGGACATCCAACGCTGGTGTTGAAAATGTGGTGGAAAAGTTCAGGAATACTTGTGAGCATAACAAGAAGATGGCGACTCAAGAGAGTTTCCTGTCAGAAAGAATCGCCAAGGGTAGAGAGAAGATGAAGAAACATGTTAGGAGCAACCAAGAGAAGGAGATGACCATGTTCATGTTTCAGTGCCTTAAGAATGGGAGGGTTGAACTGCACAATAACATGACCCCAGATGATTTGAATGTTCTTTCATCAGTGATTGAAAGCAAGTTGAGGGATATTAATAAAAAGATGGAAACTTTGAATGTTTCTGAGATGCCACCAAATCAAACCCAGATGGCACCACCAGCACTACCAGTAGCATTACCAGTAGCAGCACCAGTAGCATTACCAGTAGCAGCACCAGTAGCAGCACCAGAAAACATCATCACACCACCAAATCATGGCGATGGAACATATATGAATGCTGATGACCCCTTGCAAAGCCAGTGGTTCATGGACTTGCTTAATGATAATGGTGATGAGGAGACTATAAAGTCTTCATTTGGAGATCCTAATCTCCCACCACTCTAA 738 0.4295 MSRRKVQLTFIANNSDRKASYIKRKKSLLKKTEEISTLCGVEACTIVYGPYAPVPDVWTSNAGVENVVEKFRNTCEHNKKMATQESFLSERIAKGREKMKKHVRSNQEKEMTMFMFQCLKNGRVELHNNMTPDDLNVLSSVIESKLRDINKKMETLNVSEMPPNQTQMAPPALPVALPVAAPVALPVAAPVAAPENIITPPNHGDGTYMNADDPLQSQWFMDLLNDNGDEETIKSSFGDPNLPPL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00715 245 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vian6g00715 245 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Vian6g00715 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian6g00715 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian6g00715 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian6g00715 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian6g00715 245 PANTHER MADS BOX PROTEIN 3 155 - -
Vian6g00715 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian6g00715 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vian6g00715 245 FunFam Agamous-like MADS-box protein AGL80 13 96 - -
Vian6g00715 245 CDD MADS_SRF_like 3 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00715 Vian-Chr6 23995767 23996504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00715 1 156 Type I MADS-box Gene Family AT5G48670 48.101 1.15e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian6g00715 SRF-TF 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00715 - - vun:114188526 421.394