Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00714 ATGACAGGGAGAAAGGTGAAACTGGCATTCATAGCCAATGATTGTGCCAGGAGGGCATCGTATAGAAGAAGGAAGAAGTCAATGTTGAAGAAGATTGAAGAACTGAGCACCCTTTGTGGAGTAGAAGCATGTGCCATAGTGTATAGCCCCTTTGATCAAGAGGCACAGATTTGGCCATCTGAATCAGGTGTGCAGAATGTGGTTGAAAAGTTCAGGACTATGCCTGAATGGAAGAAGCACAAGATGGGGAATCAGGAGAGTGTCATGGAAAAGAGTATTATGAAGGGTAAAAGGAAGATTGCGAAACTTGAAGAAGAGAATAAGGAAATGGAGATTACCATGTTCATGTTTCAATGCCTTGATACAACTAGGGTTCAGCATCAACAAAACATGACTTTGGAAGATTTGAATCTTCTGTCATCGGTGATTGAACAGAAACTGAACGACGTTAGTAGAAGGTTGGATTTGACAGATGTTACTGAGGTACCATACCAACCCCAGATACAAACATTTGTAGATACTAATCTTAAACTCTAA 537 0.4078 MTGRKVKLAFIANDCARRASYRRRKKSMLKKIEELSTLCGVEACAIVYSPFDQEAQIWPSESGVQNVVEKFRTMPEWKKHKMGNQESVMEKSIMKGKRKIAKLEEENKEMEITMFMFQCLDTTRVQHQQNMTLEDLNLLSSVIEQKLNDVSRRLDLTDVTEVPYQPQIQTFVDTNLKL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00714 178 FunFam agamous-like MADS-box protein AGL80 13 96 - -
Vian6g00714 178 Coils Coil 93 113 - -
Vian6g00714 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vian6g00714 178 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vian6g00714 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian6g00714 178 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vian6g00714 178 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
Vian6g00714 178 PANTHER MADS BOX PROTEIN 5 138 - -
Vian6g00714 178 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00714 Vian-Chr6 23991297 23991833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00714 1 156 Type I MADS-box Gene Family AT5G48670 47.134 1.48e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian6g00714 SRF-TF 9.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00714 - - pvu:PHAVU_006G077900g 307.375