Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00713 ATGACTAGAGCCAAGATCGAACTTGCTTACATAACAGATCCTGCAAAGAGGAAAGCAACTTTCAAGAAAAGGAAAAATGGTTTGATGAAAAAGATCAGTGAAATCACTGTCCTTTGTGGGATTGATGCATGTGCTGTAGTGTATAGTCCTGATCTGCCTAACAAGCCAGAGGTTTGGCCATCTGAATCAGAAGCCAGAAGTGTGATTTCCAAGTTCAATGGTGTGTCTGAGGCTGAGAAAAGAAAGAAAATGTTCTGCCAAGAAAGCTTTATAAGACAGAGAATTGACAAAGGCAAAGAGCAGCTGAAGAAACTGAAGAATGAAAATAGGAAGAGGGAGATTAACCTTCTCATGTGTGAATACCTCACTCATGGAGGCAACAACCTTGACAGTAACAACATGAGTTATCTCAAGGACTTTTCATTCTTCACTGATCAAAATTTGGATGAAATTAGAAACAAAATCACTATGCTCCAAACCCAAGAGGAGACACCAGAAACCATGGATCAAGGAGAGCAGGCACAGTTTCTCTTGATTGAGTTGATCTATGTTTAG 555 0.3982 MTRAKIELAYITDPAKRKATFKKRKNGLMKKISEITVLCGIDACAVVYSPDLPNKPEVWPSESEARSVISKFNGVSEAEKRKKMFCQESFIRQRIDKGKEQLKKLKNENRKREINLLMCEYLTHGGNNLDSNNMSYLKDFSFFTDQNLDEIRNKITMLQTQEETPETMDQGEQAQFLLIELIYV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00713 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 159 - -
Vian6g00713 184 Coils Coil 88 115 - -
Vian6g00713 184 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vian6g00713 184 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Vian6g00713 184 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Vian6g00713 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vian6g00713 184 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vian6g00713 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian6g00713 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian6g00713 184 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vian6g00713 184 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00713 Vian-Chr6 23980399 23981260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00713 1 151 Type I MADS-box Gene Family AT3G05860 45.033 6.97e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian6g00713 SRF-TF 2.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00713 - - var:108342715 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00713 6 23980399 23981260 Vian6g00713 6 23980399 23981260 ECH