Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00708 ATGTGCAGAGGTGTGGCCCACAATATTAGCGGTTGGGAACCCCAACCAGAACCAGCGCATGTGCACTTCATTTGTCACTTGCCTTATCATAAGCTCACAATCATGCCTCTTCTCACTCTCATTGCTGTTCTCTTTCTTAACATCAATCTCCAAGGTGTTACTGCTGACTATGGTGGTTGGCAGGGTGGTCATGCCACTTTCTATGGTGGGGGTGATGCTTCTGGCACAATGGGTGGAGCATGTGGGTATGGAAATCTGTATAGCCAGGGTTATGGAACAGACACTGTGGCTCTAAGCACTGCTTTGTTCAACAATGGCTTAAGCTGTGGATCTTGCTATGAAATGAGATGTGATGATGACCCAAGATGGTGCAAACCTGGCTCTATTATCGTCACTGCTACTAACTTCTGTCCCCCAAATCCATCTTTGCCAAACAACAATGGTGGTTGGTGCAACCCACCTCTGCAACACTTTGATATGGCTGAACCTGCCTTCCTTCAGATTGCAGAATATAGAGCTGGAATTGTCCCAGTGGCCTTCAGAAGGGTTCCTTGTGTGAAGAAGGGAGGAATAAGGTTCACTATCAATGGTCACTCTTACTTCAACCTAGTTTTGGTCACCAATGTGGCTGGTGCTGGGGATGTGCATTCAGTGTCCATCAAAGGGTCCAAAACTGGGTGGCAACCCATGTCAAGAAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTGAATGGACAAGCCCTTTCTTTTCAAGTCACCACCAGTGATGGCAGAACTGTGGCAAGCTACAATGTGGCACCAGGCAATTGGCAATTTGGGCAGACCTTCCAAGGAGGCCAATTCTAG 849 0.4794 MCRGVAHNISGWEPQPEPAHVHFICHLPYHKLTIMPLLTLIAVLFLNINLQGVTADYGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTDTVALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSIIVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVHSVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRTVASYNVAPGNWQFGQTFQGGQF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00708 282 PRINTS Expansin/Lol pI family signature 265 279 IPR007118 GO:0005576
Vian6g00708 282 PRINTS Expansin/Lol pI family signature 173 189 IPR007118 GO:0005576
Vian6g00708 282 PRINTS Expansin/Lol pI family signature 59 74 IPR007118 GO:0005576
Vian6g00708 282 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576
Vian6g00708 282 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Vian6g00708 282 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Vian6g00708 282 Gene3D - 47 185 IPR036908 -
Vian6g00708 282 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 190 IPR007112 -
Vian6g00708 282 FunFam Expansin 49 186 - -
Vian6g00708 282 Gene3D - 190 282 IPR036749 -
Vian6g00708 282 PRINTS Expansin signature 165 178 IPR002963 GO:0009664
Vian6g00708 282 PRINTS Expansin signature 117 128 IPR002963 GO:0009664
Vian6g00708 282 PRINTS Expansin signature 189 201 IPR002963 GO:0009664
Vian6g00708 282 PRINTS Expansin signature 265 281 IPR002963 GO:0009664
Vian6g00708 282 PRINTS Expansin signature 129 139 IPR002963 GO:0009664
Vian6g00708 282 PRINTS Expansin signature 236 257 IPR002963 GO:0009664
Vian6g00708 282 PRINTS Expansin signature 90 104 IPR002963 GO:0009664
Vian6g00708 282 PRINTS Expansin signature 148 165 IPR002963 GO:0009664
Vian6g00708 282 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Vian6g00708 282 CDD DPBB_EXPA_N 59 185 - -
Vian6g00708 282 SUPERFAMILY PHL pollen allergen 187 279 IPR036749 -
Vian6g00708 282 SUPERFAMILY Barwin-like endoglucanases 42 208 IPR036908 -
Vian6g00708 282 SMART dpbb_1 95 180 IPR007112 -
Vian6g00708 282 Pfam Lytic transglycolase 95 179 IPR009009 -
Vian6g00708 282 FunFam Expansin 190 282 - -
Vian6g00708 282 Pfam Expansin C-terminal domain 191 268 IPR007117 -
Vian6g00708 282 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 200 279 IPR007117 -
Vian6g00708 282 PANTHER EXPANSIN-A15 41 282 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00708 Vian-Chr6 23914188 23916438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00708 37 282 Expansin Gene Family AT2G40610 80.162 4.30e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00708 - K20628 gmx:100777044 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00708 6 23914188 23916438 Vian6g00708 6 23914188 23916438 ECH
Vian6g00708 6 23914188 23916438 Vian3g02086 3 27527270 27529446 ECH