Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00697 ATGGCTGATGAAAATGGAAAGTGGCTCGCGTTTCCTTTGGGTGAGAAGGGTATTGGGACTGCACCCTATTTGATCCACTGTCCACCACAAACAGTTGTAAATGGTGATAAGACATTTTTGTTGATTAGACCAGCATTGTTAGAATCAAATTTCAATGTTAGAATAGGGGAGAAGGAGGGGGGTGGAGCTCTAGGATTGTTTGATTGTGTTATGGAGATATCATTGTTAAAAATGATAGTAAATGGCATATCCTCGTTTTTGCATTTATCAATTTCTGGAAACAAGAGCTCTGAACCTGTCTCAAAGTATTACCACAAGGCAGAGGAGATACTTAAGCTGTTGAAACCAATCATTGATGAGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATTGGTCTTGCTGTTAATGAATTAAAGGAGCATGTCGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTTTGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCATTCTCTCCCTGATGAATTGAGTTCTGAAGATTTACAGCAATGTTCACATAAACTTAAGCTTTTGGGGCATGAAGAAACCTCATCAGTTATTAAGGAAGCTATTGCAGCACAACTGGAATATGCAGGACCCAGTCCAGAGGTCCTGACAAAAATTGCTGATAGGCTGGACCTCATGTCTAATCAGGATGTTCTTATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAAAATGCTGAACAATCTGAAAAGACTGATGAGGCAGAATACATCGATCAAATGATTGCTGTCATAACACGTATGCTCGAGCGTCTCGTTATGCTTAAGCAAGCTCAGAGTAGCAGCCCAGTTCCAATACCGGCTGATTTTTGTTGTCCACTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTGGCATCAGGACAAACTTATGAGCGAGCCTTCATCAAGAACTGGATTGATCTTGGGCTAACTGTTTGTCCAAAGACACGACAAACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTCTAATTGCAAATTGGTGTGAATCTAACAATGTGCAACTAGTTGATCCCACAAAATCCACAAATTTAAATCCACCATCCGTCCTTCATGGGTATATGGAATCCGGTACGACCAGGGAGTCTCCTGTTTTTGCTCATCCCAGGAGCAACCAGCCGTCCTCACCTGAGTCAGCACGTTCTCGTTCTTTTAGTTCACCAGGTAATAACATAACTTCTGTTGGCATTCAGCTAGAGGAAACAACATCACCTTTGCATCCCCGTTCTACTTCAGAAGGTTCCTTAAGTGGTATAATTAATGGACAATACATGGATCTTGCAAGAATATCTCCCGCTGGTTTGGATGACAGGTCTGCTAGCTCTGATGAAAGTACTGTGGATTCAGCTAGCCAGCCATCAATGTCACCATCTAGAAGGGAATCATCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGACTCCAGTGCACTTTCTACTGCAAACTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCGGCTATCAATAAGTCCAGGCCACAGTAGAGATGCTTCTGGTGAATTAAATGCAGGGCCAGAAACTGCTGGTACTACTGTCATGCCATCAACACATAGAGAAGCTGAGTCCCCAGCCCGATTGTTAGAGACAAGGCGAAATCAAGGCATATGGAGGCGGCCACCAGAAAGGCTTGTTCCTAGGATAACATCTCCTGCTATTGAAACAAGAGCCGATCTTTCAGGTATTGAAGCCCAGGTCCGGAATTTGGTTGAGGGCCTGAGGAGCTCCGATCTTGATACTCAGAAAGAGGCAACAGCAGAACTCCGCCTTCTTGCAAAGCACAATATGGATAATAGAATTGCGATTGCAAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTAGATCAGCTGATATAGCAATCCAAGAAAATGCTGTTACCGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCACGTGCTTGAGACTGGGAGCCCAGAAGCCAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCCGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCAATTAGACCACTGGTAGATTTATTGGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAAACGCAATTGGTGAAGAAGGTGGGATTCCTGTGCTGGTTGAGGTTGTTGAGTTAGGTTCTGCGAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACAGCTTTGTTTACATAGTAACAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCACCGTTAGTAGCTTTATCTCAGTCAGGCACCCCCAGAGCCAAAGAAAAGGATGTCCTTTGA 2676 0.4309 MADENGKWLAFPLGEKGIGTAPYLIHCPPQTVVNGDKTFLLIRPALLESNFNVRIGEKEGGGALGLFDCVMEISLLKMIVNGISSFLHLSISGNKSSEPVSKYYHKAEEILKLLKPIIDEIVNSELASDEVLNKILEEIGLAVNELKEHVENWHLLSSKVYFVLQVEPLISRIRTSGLNIFQQLKVSQHSLPDELSSEDLQQCSHKLKLLGHEETSSVIKEAIAAQLEYAGPSPEVLTKIADRLDLMSNQDVLIEAVALERLKENAEQSEKTDEAEYIDQMIAVITRMLERLVMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPTKSTNLNPPSVLHGYMESGTTRESPVFAHPRSNQPSSPESARSRSFSSPGNNITSVGIQLEETTSPLHPRSTSEGSLSGIINGQYMDLARISPAGLDDRSASSDESTVDSASQPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSTANFPQETQDDDNNARLSISPGHSRDASGELNAGPETAGTTVMPSTHREAESPARLLETRRNQGIWRRPPERLVPRITSPAIETRADLSGIEAQVRNLVEGLRSSDLDTQKEATAELRLLAKHNMDNRIAIANCGAINLLVDLLRSADIAIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLQLCLHSNKFLGKVLQQGAVPPLVALSQSGTPRAKEKDVL 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00697 891 MobiDBLite consensus disorder prediction 408 437 - -
Vian6g00697 891 SMART Ubox_2 309 372 IPR003613 GO:0004842|GO:0016567
Vian6g00697 891 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 664 706 IPR000225 GO:0005515
Vian6g00697 891 FunFam RING-type E3 ubiquitin transferase 305 380 - -
Vian6g00697 891 Gene3D - 605 889 IPR011989 -
Vian6g00697 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 385 IPR013083 -
Vian6g00697 891 MobiDBLite consensus disorder prediction 478 589 - -
Vian6g00697 891 CDD RING-Ubox_PUB 307 359 IPR045210 -
Vian6g00697 891 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 787 828 IPR000225 GO:0005515
Vian6g00697 891 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 746 788 IPR000225 GO:0005515
Vian6g00697 891 PANTHER U BOX DOMAIN-CONTAINING 99 888 - -
Vian6g00697 891 MobiDBLite consensus disorder prediction 384 437 - -
Vian6g00697 891 SUPERFAMILY ARM repeat 624 886 IPR016024 -
Vian6g00697 891 ProSiteProfiles U-box domain profile. 305 379 IPR003613 GO:0004842|GO:0016567
Vian6g00697 891 SMART arm_5 816 856 IPR000225 GO:0005515
Vian6g00697 891 SMART arm_5 653 693 IPR000225 GO:0005515
Vian6g00697 891 SMART arm_5 607 651 IPR000225 GO:0005515
Vian6g00697 891 SMART arm_5 776 815 IPR000225 GO:0005515
Vian6g00697 891 SMART arm_5 735 775 IPR000225 GO:0005515
Vian6g00697 891 SMART arm_5 694 734 IPR000225 GO:0005515
Vian6g00697 891 MobiDBLite consensus disorder prediction 482 550 - -
Vian6g00697 891 FunFam RING-type E3 ubiquitin transferase 607 891 - -
Vian6g00697 891 SUPERFAMILY RING/U-box 296 383 - -
Vian6g00697 891 Pfam Armadillo/beta-catenin-like repeat 694 733 IPR000225 GO:0005515
Vian6g00697 891 Pfam Armadillo/beta-catenin-like repeat 655 692 IPR000225 GO:0005515
Vian6g00697 891 Pfam Armadillo/beta-catenin-like repeat 737 774 IPR000225 GO:0005515
Vian6g00697 891 Coils Coil 249 269 - -
Vian6g00697 891 Pfam U-box domain 306 376 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00697 Vian-Chr6 23768949 23777945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00697 266 888 U-box Gene Family AT2G23140 62.124 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00697 - - gmx:100811250 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00697 6 23768949 23777945 Vian7g01806 7 28457835 28460924 PCT