Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00683 ATGGAGACTGAAGCTGACTCAAGAGATACTTCACTCATTCTGCTCAAACAAGGAGCTGAGGCTAGGATTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGCTTCTCAAAGAAGTACAGGCATCCAGCTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCGGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGTGTTTGTACTCCTGTGCTGTATGCTGTGGATCACGTGTTGCACACTTTAACATTTGAATATGTTACTGGCTCTTCAGTCAAAGATGTGTTCCTTGAAATCGGGTCACGTGGGACTGATAAAGAGTGGCTGGACAATATAGCATCCCAAATTGGTGAAGCAATTGGGAAGTTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTGTTGAAGAGTGATACCAAGCAGTTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTTCCAGAAGATAAAGCTGTTGATTTGTATGTTCTGGAAAGATCTTTTATCTCAATGCATTCATCATGTGGGAATGTGATGGATCAAATTCTTGCTGCATACAGGAAGTCGTCAAAACAGTGGTCATCCACATTAAACAAGCTAGCACAAGTGCGACAAAGAGGGCGGAAGAGGACCATGGTTGGATGA 681 0.4244 METEADSRDTSLILLKQGAEARIFESSFVGRKSVVKERFSKKYRHPALDSKLTLKRLNAEARCMTKARRLGVCTPVLYAVDHVLHTLTFEYVTGSSVKDVFLEIGSRGTDKEWLDNIASQIGEAIGKLHDGGLIHGDLTTSNMLLKSDTKQLVLIDFGLSFTSTLPEDKAVDLYVLERSFISMHSSCGNVMDQILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00683 226 NCBIfam KEOPS complex kinase/ATPase Bud32 18 220 IPR022495 GO:0004674
Vian6g00683 226 Gene3D Transferase(Phosphotransferase) domain 1 107 223 - -
Vian6g00683 226 SMART serkin_6 9 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00683 226 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 226 IPR022495 GO:0004674
Vian6g00683 226 Pfam Protein kinase domain 42 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00683 226 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Vian6g00683 226 ProSiteProfiles Protein kinase domain profile. 9 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00683 226 FunFam TP53-regulating kinase isoform X1 20 92 - -
Vian6g00683 226 FunFam Protein kinase superfamily protein 107 223 - -
Vian6g00683 226 SUPERFAMILY Protein kinase-like (PK-like) 14 175 IPR011009 -
Vian6g00683 226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00683 Vian-Chr6 23525199 23527660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00683 2 160 MAP Kinase Kinase Kinase AT5G66710 26.380 5.99e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian6g00683 Pkinase 7.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00683 K08851 - gmx:100782376 406.371