Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00677 ATGACCACTTCTTTCTCTGACCTTCTCTCTTCTCCCACCGACCACAACCTAGGAGGTTCCGAAAGACCTCAAGAGTTGTCGGATCAAACAGGTTCTGCTGTGCCAAAATTCAAGTCCACACCTCCTCCATCTCTCCCTATCTCTCATCCTCAAAATCATCCTCTTCCACCCATTTCTCCTTCTTACTTTAACATTCCTCATGGGTTAAGCCTCGCTGAACTTCTTGACTCCCCAGTTCTCCTTCACTCTTCCAACGTTTTGCCATCTCCGACCACTGGATCATACGCTGGTCAAGGCTTCAATTGGAAGAGTTATGGGGAAAGCCAGCAGCATGTCAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCCTTCCAAACACAACCACAAACACAGATTCCTCTTACGTCTTCAACTGGATTTCAATCTTCAAACGGGTGGAGTTTCCCGGAAACTGCTAAACAAGATGGATTCTCTTCAAGAATGAATATGAGTATGGTGAAAACTGAAGCCTCTTCAGGTATGCAGAGTTTCAACTCTGAGAATAATAACCACAGCAGTGCTGGTCTTCAATCAGATTATAGCAGTTACCAGCCACAGGTTCAGATCTTAAGCAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCCAGTTGTCCAACAAAGAAAAAGGTTGAGAGGTCCTTAGATGGACAAATTACTGAGATTGTTTACAAAGGTAGTCATAATCATCCTAAGCCTCAGGCTAACAAGAGGAACTCATTGTCTGCCTCATCACTCGCAATAAACAGCGTCAACAATGAAATAGCACAAGCCACTCATCACATGGATTCGGTTGCAACTCCAGAAAACTCATCAATATCAATGGAAGATGACGACTTTGGTCAGAGCAAATCAGGAGGAGATGAGTTTGATAATGATGAACCTGATGCCAAAAGATGGAGTTACTACAAATGCACATTCACAGGATGTCCAGTGAGGAAGCACGTAGAGAGAGCTTCACATGACCTAAGGGCAGTGATCACAACCTACGAGGGAAAGCACAACCATGACGTGCCGGCAGCACGTGGCAGTGGCAGCAACTCTATCAGCAGAGCAGTGCCTATAAACGCTACCACAAACAGCACCACTAGTGCAGCAACTTCCATATACAGTAACAATTCTCACCAGAATCTTAGACCACCAGCACTAGAAAGGACACAACACTACAATCCCAGTATGCAACAGGGCTCAGGAAGTTTTGGATTCTCAGGGTTTGGGAATCCATTAATGGGGTCTTACATGAACCAACAATCTGACAATGTGTTCGCTTCTAGAGCCAAGGAAGAGCCAGGAGATGACTCTTTTCTTGACTCTTTGCTATGTTAA 1425 0.4442 MTTSFSDLLSSPTDHNLGGSERPQELSDQTGSAVPKFKSTPPPSLPISHPQNHPLPPISPSYFNIPHGLSLAELLDSPVLLHSSNVLPSPTTGSYAGQGFNWKSYGESQQHVKEEDKSFSSFSFQTQPQTQIPLTSSTGFQSSNGWSFPETAKQDGFSSRMNMSMVKTEASSGMQSFNSENNNHSSAGLQSDYSSYQPQVQILSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQANKRNSLSASSLAINSVNNEIAQATHHMDSVATPENSSISMEDDDFGQSKSGGDEFDNDEPDAKRWSYYKCTFTGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNSISRAVPINATTNSTTSAATSIYSNNSHQNLRPPALERTQHYNPSMQQGSGSFGFSGFGNPLMGSYMNQQSDNVFASRAKEEPGDDSFLDSLLC 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00677 474 MobiDBLite consensus disorder prediction 1 37 - -
Vian6g00677 474 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 334 402 IPR044810 GO:0003700
Vian6g00677 474 ProSiteProfiles WRKY domain profile. 208 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g00677 474 Pfam WRKY DNA -binding domain 208 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g00677 474 Pfam WRKY DNA -binding domain 333 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g00677 474 MobiDBLite consensus disorder prediction 294 328 - -
Vian6g00677 474 SUPERFAMILY WRKY DNA-binding domain 205 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g00677 474 MobiDBLite consensus disorder prediction 39 56 - -
Vian6g00677 474 MobiDBLite consensus disorder prediction 1 56 - -
Vian6g00677 474 SMART WRKY_cls 207 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g00677 474 SMART WRKY_cls 309 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g00677 474 MobiDBLite consensus disorder prediction 169 194 - -
Vian6g00677 474 SUPERFAMILY WRKY DNA-binding domain 333 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g00677 474 MobiDBLite consensus disorder prediction 314 328 - -
Vian6g00677 474 Gene3D WRKY domain 194 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g00677 474 Gene3D WRKY domain 295 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g00677 474 MobiDBLite consensus disorder prediction 294 312 - -
Vian6g00677 474 FunFam WRKY transcription factor 197 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00677 Vian-Chr6 23491222 23494067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00677 1 473 WRKY Transcription Factor Family AT2G38470 36.170 1.10e-60 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian6g00677 WRKY 2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00677 K13424 - gmx:100127385 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00677 6 23491222 23494067 Vian6g00677 6 23491222 23494067 ECH
Vian6g00677 6 23491222 23494067 Vian7g01835 7 28972170 28974984 PCT