Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00663 ATGGGGGGTACCTCACCTTGTGCTTCTTGCAAGTTGCTGAGACGTCGTTGCTCCAAGGAATGCATCTTTGCTCCTTATTTTCCTTCTGATGACCCACGCAAGTTTGCCATTGTGCATAAGGTGTTTGGTGCTAGCAATGTCAGCAAAATGCTGCAGGAACTTGGTGTTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTACGAGGCAAATGCAAGAGTGAGAGATCCAGTGTATGGATGTGTTGGAGCCATATCATACCTACAAAACCAGGTTTCACAGTTGCAAATGCAACTTGCAGTGGCTCAAGCAGAGATTCTATGCATTCAGATGCAGCAACAAGAACCTACCATAACCACACAAGTAGACCAAGATCAAAAATCACTGCTTCTGTCTGTAAACAATAACTATGAAACTCTTCCTCACTATCTTAACTTTCCTTCATCTTCTTCCTCCTCTTCAAATGTCTTCCATGACCCTCATGAGCCTCTCAAGAGAGAGTCTTTTTGGGCTTGA 516 0.438 MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELGVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQQEPTITTQVDQDQKSLLLSVNNNYETLPHYLNFPSSSSSSSNVFHDPHEPLKRESFWA 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00663 171 Coils Coil 85 105 - -
Vian6g00663 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 142 - -
Vian6g00663 171 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vian6g00663 171 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00663 Vian-Chr6 23320293 23320886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00663 3 170 AS2 family AT2G30130 65.608 1.31e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian6g00663 LOB 3.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00663 - - gmx:100819419 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00663 6 23320293 23320886 Vian6g00663 6 23320293 23320886 ECH