Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00650 ATGTCCATGGCTGGTAGTACTGAGCAAGGTGACAGATGCTCCTCCATCATCACCATACCCCTTTTGGAAGATGAAAGAGTGCACCGATTGAACGGCTCAGATGAGGTGTTGGGTGCCAAAACTTGGGATCTGCACACATCTCATGAGGGTAACACCTCCTTTTTCAAGACCTGCTTCAATCTCATTAATGCCCTCTCAGGGGTTGGTATTATCTCGATGCCTTATGCTCTGGCATCTGGTGGATGGTTAAGCATATCACTACTATTTGTGATAGCCATTGCTTGTTGTTACACTGGGATGTTGGTGAAAAGATGCATGGACATGGACCCTGATATCAGAACCTTCCCTGACATAGGTCAACGTGCATTTGGATACAAGGGGAGGCTAATGGTATCGATCGCCATGAATTCTGAGCTCTATCTGGTTGTAACAGGCTTTCTGATATTAGAGGGTGACAATCTTAACAAATTAGTACCAAATATCCAAGTTAACCTTGCAGGGGTTACAATTGGTGGTGCAACAATTTTTACCATAGTTGCTGCCCTTGTTATTCTTCCCAGTCTTCTGTTAGAGGATTTGAGCATGCTGTCTTATGTGTCTGCAAGTGGGGCTTTGGCTTCTTCCATCTTCCTCCTCTCTCTGTTTTGGAATGGTACCATTGATGGCACTGGATTTCATGCAAAGGGAAAACTCTTCAGATTCACCGGAATACCTGCTGCTGCCAGTTTATATGCCTTCTGTTATAGTGCACATCCTATTCTTCCCACTCTCTACAATTCCATGAGAGACAAAACTCAGTTCTCCAAGGTTCTGTCTACGTGCTTTTCAGTATGCACTCTTGGTTATGCAGCAGCAGGTGTTTTGGGGTACCTAATGTTTGGAGAAGAGGTTGAATCACAGGTGACATTGAACCTACCAACAAGCAAGTTCAGTTCACATGTGGCAATATTCACGACCTTGGTGAATCCTATAACGAAGTATGCATTGATGCTTACCCCAGTAATAAATGCTGTGAAAAACAAGATTTCATGGCACTGCAACAAAAGATTCACACACACATTTGTTAGCACCTCCATTCTCGTAAGCTCTCTAATTGTAGCTGTGGCCATACCAATGTTTGGATATCTGATGTCACTGATTGGGGCATTGCTAAGTGTGTCAGCTTCAATTTTAGTACCATCAGTGTGCTACTTGAAGATTTCAGGAGCATACAAGACATTTGGCTCTGAAATGATCATCAACTATTCAATAATAGTATTGGGGGTTACTATTGCTGTTGTCGGTACTTATACATCTCTTGTAGATATAGTTCATAACTTGTAA 1323 0.4263 MSMAGSTEQGDRCSSIITIPLLEDERVHRLNGSDEVLGAKTWDLHTSHEGNTSFFKTCFNLINALSGVGIISMPYALASGGWLSISLLFVIAIACCYTGMLVKRCMDMDPDIRTFPDIGQRAFGYKGRLMVSIAMNSELYLVVTGFLILEGDNLNKLVPNIQVNLAGVTIGGATIFTIVAALVILPSLLLEDLSMLSYVSASGALASSIFLLSLFWNGTIDGTGFHAKGKLFRFTGIPAAASLYAFCYSAHPILPTLYNSMRDKTQFSKVLSTCFSVCTLGYAAAGVLGYLMFGEEVESQVTLNLPTSKFSSHVAIFTTLVNPITKYALMLTPVINAVKNKISWHCNKRFTHTFVSTSILVSSLIVAVAIPMFGYLMSLIGALLSVSASILVPSVCYLKISGAYKTFGSEMIINYSIIVLGVTIAVVGTYTSLVDIVHNL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00650 440 Pfam Transmembrane amino acid transporter protein 51 432 IPR013057 -
Vian6g00650 440 PANTHER AMINO ACID TRANSPORTER 45 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00650 Vian-Chr6 23178901 23182834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00650 43 437 Amino Acid or Auxin Permease AAAP Family AT3G28960 53.788 5.62e-153 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00650 K15015 - gmx:100784690 735.332