Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00633 ATGCCAACCCAAGCTGACTCGCCCAACACGTTGACCCAAATGTTTCAGAACATCTTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCCCTTCTCCTTGTCATCCTCTTTGTCCTCCTTCTACACCTCTATGCCAGATGGTTCCTTGCTCAGGCACAGGCTCAGGCACACGCCCGCCGTCGACGCCGCCGCCGCCGAACCACGGTGACCGTCTCCGACGTCCTTGGCCCTGCTAGGTTCCACCAGTTCCACAGCTTCAACATAGAAGACTCCTCACCCCTCTCAACCAAAGGCCTGGATTCTTCCACCATTAGAGCAATTTCTCTCTTCATCTATGAGCATAACAACAAGGCAAAAGAAGATGAAGAACTTGAATGTGTGATTTGTTTGAGTGCCTTTGAGGGTGGTGAAGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGTTAAGTTCACACTCCAATTGTCCTATTTGTAGAGCCCCCATTGTAGTAAATGTTGTTGAGAGCGATTCTTCTCAGGTTGTGTCTTCAAGAGATCATGGTGCTGAATATGGTGGTTCTGATTTTGAGATTGTGGTTGATGCTGGTTCCGATGAGACTAGAGAGAGTGATCACGGGAATGGTAATGGTAATGGAGGAGCAAGAACAAGTGTTTCTGTGTCAGAAACCTCTTCCTCGTTTTTGGGGTGCTCTTTGGAGAGAATGCTTGGCAAGGTTTTCCCTTCGGCTAATTAA 768 0.4805 MPTQADSPNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYARWFLAQAQAQAHARRRRRRRRTTVTVSDVLGPARFHQFHSFNIEDSSPLSTKGLDSSTIRAISLFIYEHNNKAKEDEELECVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVVNVVESDSSQVVSSRDHGAEYGGSDFEIVVDAGSDETRESDHGNGNGNGGARTSVSVSETSSSFLGCSLERMLGKVFPSAN 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00633 255 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vian6g00633 255 Pfam Ring finger domain 127 170 IPR001841 -
Vian6g00633 255 CDD RING-H2_EL5-like 127 170 - -
Vian6g00633 255 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 175 IPR044675 -
Vian6g00633 255 FunFam RING-H2 finger protein ATL1 87 175 - -
Vian6g00633 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 175 IPR013083 -
Vian6g00633 255 SMART ring_2 128 169 IPR001841 -
Vian6g00633 255 MobiDBLite consensus disorder prediction 209 229 - -
Vian6g00633 255 SUPERFAMILY RING/U-box 116 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00633 Vian-Chr6 22965050 22965817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00633 17 222 Rapid Response to Elicitors AT3G16720 32.039 1.47e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00633 - - pvu:PHAVU_006G070000g 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00633 6 22965050 22965817 Vian6g00633 6 22965050 22965817 ECH
Vian6g00633 6 22965050 22965817 Vian7g01915 7 30436944 30439163 PCT