Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00629 ATGGTTTCTACTTGGGTAAGAGGCAAGTGCATAGGCAAGGGCGCGTTTGGTACCGTCAGCGTCGCGCTTCGAAAGCTTGACGCCCAAACGCAAATTTTCGCGGTGAAGTCTGTGGATATTAAAACGGGTCTCCCGGGTCAGCTCGAAGCGTTGGAGAACGAAATTCGGATCCTCCGACGCATGTCCTCGCCGCACGTGGTAACCTTTCTCGGCGAAGACACCACATGCGAGAAGCGGAACCTTCACATGGAGTACATGCCATGTGGCACTCTCGCTGACCTGGACCCCGACGTGGACGAGTATTTAGTGAGACAATACACGTGGTGCTTGGTGAGCGCTCTGAAGCACGTGCACGGAAACGGCGTCGTGCACTGCGACGTGAAGGGGAAGAACGTCCTTGTTGGAGACGGAGCCAACGGTCGCAACTGCAAGCTCGCCGACTTCGGCTCGGCGATGGAGTTCGACGGGGAAGGTCTCCCGGCGGCATCGCCGCGCGGGAGTCCGCTGTGGATGGCGCCGGAAGTGATACGCCGGGAGTGTCAGGGTCCGGCGTCGGACGTTTGGTCGTTAGGTTGCACGATGATCGAGATGCTCACCGGAAAACCGCCGTGGGAGGGGAACGCCGTGGACGCGCTGAGTCGGATTGGATTCTCCGGCGAGGTGCCGGGGTTTCCGCGCCGGTTATCGGAGCTCGGCCGGGATTTTCTGGAGAAGTGTTTGAGGAGGGAGCCGTGGCGGCGGTGGAGCTGCGATCAACTGCTGGAGCATCCGTTTCTGTTACCGTGTGGTGTGATCGTGGAATCGTCGCCTCGGTGTGTTCTCGACCGAGTTGACTCGGAGTTCGCTGAGTTCGACGAGGAAGAAGAACAGGAAGAAGAAGAAATAATAACTGAAAGTGAAAATTCGGCAAGGGATAGAATTGGAAAATTGGCTACGAGCGTAGGGGTAAATTGGGAAGCGCCAGGATGGGTGATGGTGAGGGAATTGGCTTTCGATGCCGAACCGGTGGTGGCTGACAGTTCTGAGAATGTTAGAGAAGGGTCGATTTTGGAAAATTTTGAGAATTCGAGGGAAGAACGGGGAATTCAGGAAAGGACAAATTCGGAATGTGAAAGCTTGAAAAACGAAATGGTAAAATTGGGAATGTGGTGTTTGGGTGGGAGGCGGTGGTTGTTACAGTACAACCGGCGCAGTGAGTGTGAGTGTGGGCAAAGGGACGATGAAGTTGTGATGTTGCGTGAGTATGACACTCCACACTTGCAAACGTGA 1269 0.554 MVSTWVRGKCIGKGAFGTVSVALRKLDAQTQIFAVKSVDIKTGLPGQLEALENEIRILRRMSSPHVVTFLGEDTTCEKRNLHMEYMPCGTLADLDPDVDEYLVRQYTWCLVSALKHVHGNGVVHCDVKGKNVLVGDGANGRNCKLADFGSAMEFDGEGLPAASPRGSPLWMAPEVIRRECQGPASDVWSLGCTMIEMLTGKPPWEGNAVDALSRIGFSGEVPGFPRRLSELGRDFLEKCLRREPWRRWSCDQLLEHPFLLPCGVIVESSPRCVLDRVDSEFAEFDEEEEQEEEEIITESENSARDRIGKLATSVGVNWEAPGWVMVRELAFDAEPVVADSSENVREGSILENFENSREERGIQERTNSECESLKNEMVKLGMWCLGGRRWLLQYNRRSECECGQRDDEVVMLREYDTPHLQT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00629 422 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00629 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Vian6g00629 422 Gene3D Transferase(Phosphotransferase) domain 1 1 316 - -
Vian6g00629 422 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 319 - -
Vian6g00629 422 Coils Coil 274 294 - -
Vian6g00629 422 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00629 422 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00629 422 FunFam Serine threonine protein kinase putative 3 311 - -
Vian6g00629 422 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Vian6g00629 422 CDD STKc_MAPKKK 5 259 - -
Vian6g00629 422 SUPERFAMILY Protein kinase-like (PK-like) 3 267 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00629 Vian-Chr6 22918529 22920104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00629 5 334 MAP Kinase Kinase Kinase AT2G30040 58.824 9.40e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian6g00629 Pkinase 3.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00629 - - gsj:114373085 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00629 6 22918529 22920104 Vian6g00629 6 22918529 22920104 ECH
Vian6g00629 6 22918529 22920104 Vian7g01923 7 30765603 30786091 PCT